View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14163_high_1 (Length: 1022)

Name: NF14163_high_1
Description: NF14163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14163_high_1
NF14163_high_1
[»] chr4 (13 HSPs)
chr4 (303-1007)||(11551838-11552539)
chr4 (758-906)||(11433661-11433806)
chr4 (830-907)||(11561441-11561518)
chr4 (359-508)||(11434061-11434214)
chr4 (656-732)||(11433932-11434008)
chr4 (12-147)||(55205731-55205861)
chr4 (183-281)||(1856676-1856773)
chr4 (181-283)||(22536871-22536972)
chr4 (180-284)||(50348148-50348252)
chr4 (745-799)||(11561341-11561396)
chr4 (180-250)||(10032289-10032359)
chr4 (180-211)||(55203369-55203400)
chr4 (180-248)||(2515589-2515658)
[»] chr1 (5 HSPs)
chr1 (12-295)||(48985979-48986260)
chr1 (173-290)||(48990897-48991014)
chr1 (173-291)||(25491991-25492109)
chr1 (180-283)||(52432980-52433083)
chr1 (177-262)||(19880730-19880814)
[»] chr7 (6 HSPs)
chr7 (12-262)||(46164427-46164675)
chr7 (173-290)||(46169311-46169428)
chr7 (12-140)||(10091632-10091757)
chr7 (12-284)||(46513396-46513659)
chr7 (180-283)||(10092310-10092414)
chr7 (194-284)||(46582469-46582559)
[»] chr6 (1 HSPs)
chr6 (180-285)||(6356380-6356485)
[»] chr3 (2 HSPs)
chr3 (180-281)||(34373959-34374060)
chr3 (180-262)||(34374791-34374872)
[»] scaffold0060 (1 HSPs)
scaffold0060 (180-261)||(11139-11221)
[»] chr2 (3 HSPs)
chr2 (180-282)||(34227231-34227332)
chr2 (180-248)||(18259216-18259285)
chr2 (180-284)||(33669540-33669645)
[»] chr5 (3 HSPs)
chr5 (186-261)||(21632565-21632641)
chr5 (186-261)||(21640812-21640888)
chr5 (194-283)||(8740448-8740537)


Alignment Details
Target: chr4 (Bit Score: 627; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 303 - 1007
Target Start/End: Original strand, 11551838 - 11552539
Alignment:
Q  303 ttaaaaggctattgattcatactcaacttgaggcatacctaagcccaatacttcatttatgttatataatccttggaagatcgtcaattcaaagatgtat 402  Q
    |||||||||||||||||||||||| ||| |||||||||| || ||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||    
T  11551838 ttaaaaggctattgattcatactcgactggaggcatacccaaccccaatacttcatttatgttatataatacttggacgatcgtcaattcaaagatgcat 11551937  T
Q  403 tattttaaatctcacactcacttgaaaacttatactaacttgaaggtcgaagtgttaatacaccatcgaacatcaatttcattgtagattccgaccaagc 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11551938 tattttaaatctcacactcacttgaaaacttatactaacttgaaggtcgaagtgttaatacaccatcgaacatcaatttcattgtagattccgaccaagc 11552037  T
Q  503 ttaatcaatcgagaggcatttcttccactgatagcgaataagcgagtctctaagtttagttcaaaacattgagttttgtagtggtggtttatgacttgat 602  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11552038 tcaatcaatcgagaggcatttcttccactgatagcgaataagcgagtctctaagtttagttcaaaacattgagttttgtagtggtggtttatgacttgat 11552137  T
Q  603 gatattcttccaaggggattattgccttcttcgatgtttaannnnnnnnctctctcgactgtttaaagtttagaatagttaaattgtgagttgctttata 702  Q
    |||||||||||| ||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11552138 gatattcttccatggggattattgccttcttcgatgtttaattttttttctctctcgactgtttaaagtttagaatagttaaattgtgagttgctttata 11552237  T
Q  703 ttgcatgttaagaatccagtaatttattctatttatgaaagcttgagccattgagaacaggtgtaaggttataaacttacaccaaatctcatatttagaa 802  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11552238 ttgcatgttaagaatccagtaatttattctatttatgaaagcttgagccattgagaacaggtgtaaggttatagacttacaccaaatctcatatttagaa 11552337  T
Q  803 atcaaatcaaatgtgtatcaatagtcttcttcactcggcgccgattaaaacaaattatgttgtacattgaggcacaccatgtgcttcaacattaataaat 902  Q
    ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11552338 atcaaatcaaatgtgtatcaatagtctt---cactcggcgccgattaaaacaaattatgttgtacattgaggcacaccatgtgcttcaacattaataaat 11552434  T
Q  903 tattaaatttctttttgttcttaacaagcttaacaataacattattaaatttgttctttctaacaatattatgacagagtttccaagtttaaatctaaga 1002  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11552435 tattaaatttctttttgttcttaacaagcttaacaataacattattaaatttgttctttctaacaatattatgacagagtttccaagtttaaatctaaga 11552534  T
Q  1003 atatt 1007  Q
    |||||    
T  11552535 atatt 11552539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 758 - 906
Target Start/End: Complemental strand, 11433806 - 11433661
Alignment:
Q  758 aacaggtgtaa-ggttataaacttacaccaaatctcatatttagaaatcaaatcaaatgtgtatcaatagtcttcttcactcggcgccgattaaaacaaa 856  Q
    ||||||||||| ||||||| |||||| |||||| |||||||||||| ||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  11433806 aacaggtgtaaaggttatagacttacgccaaatgtcatatttagaa-tcaaatcaaatgtgtatcaatagtcttc---actcggcgccgattaaaacaaa 11433711  T
Q  857 ttatgttgtacattgaggcacaccatgtgcttcaacattaataaattatt 906  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  11433710 ttatgttgtacattgaggcataccatgtgcttcatcattaataaattatt 11433661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 830 - 907
Target Start/End: Original strand, 11561441 - 11561518
Alignment:
Q  830 tcttcactcggcgccgattaaaacaaattatgttgtacattgaggcacaccatgtgcttcaacattaataaattatta 907  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11561441 tcttcagtcggcgccgattaaaacaaattatgttgtacattgaggcacaccatgtgcttcatcattaataaattatta 11561518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 359 - 508
Target Start/End: Complemental strand, 11434214 - 11434061
Alignment:
Q  359 ttatgttatataatccttggaagatcgtcaattcaaagatgtattattttaaatctcacactcacttgaaaacttatactaacttgaaggtcgaagtgtt 458  Q
    ||||||| |||||||||| ||  | |||| ||| ||| ||| ||||||||||||||||||||||| | |||| ||||| |||||||||||||||||||||    
T  11434214 ttatgttgtataatccttagatcaccgtctatttaaatatgcattattttaaatctcacactcacctaaaaaattatattaacttgaaggtcgaagtgtt 11434115  T
Q  459 ----aatacaccatcgaacatcaatttcattgtagattccgaccaagcttaatc 508  Q
        ||||||| |  |||||||||||||||||||||||||| ||||||| ||||    
T  11434114 agcaaatacacaaatgaacatcaatttcattgtagattccggccaagctcaatc 11434061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 656 - 732
Target Start/End: Complemental strand, 11434008 - 11433932
Alignment:
Q  656 ctcgactgtttaaagtttagaatagttaaattgtgagttgctttatattgcatgttaagaatccagtaatttattct 732  Q
    ||||||||||||||  ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  11434008 ctcgactgtttaaacattagaatagttaaattgtgtgttgctttttattgcatgttaagaatccagtaatttattct 11433932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 12 - 147
Target Start/End: Original strand, 55205731 - 55205861
Alignment:
Q  12 tgagatgaacggcggcacaatcggcggttgtcggcgctgatgaga--aggaaacgaagaggttctaagggaagctgaaaagagagtgattaacgttcacg 109  Q
    |||||||||||||||||||||||| |||||| |||||||||||||   ||| |||||||| |||  ||||||||     ||||||||| ||| |||||||    
T  55205731 tgagatgaacggcggcacaatcggtggttgttggcgctgatgagagggggagacgaagagattccgagggaagc-----agagagtgagtaaagttcacg 55205825  T
Q  110 tatgaaagaagaagagaagagaagcgcgtgtttctcct 147  Q
    || || ||||||  ||||||||||||||||||||||||    
T  55205826 taagagagaaga--agaagagaagcgcgtgtttctcct 55205861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 281
Target Start/End: Original strand, 1856676 - 1856773
Alignment:
Q  183 tgtttatttttaatctgaaccattgaatcgatttttaccacgtgtcactcatccaaggccctaaatgggataaatggagctggtggtaaatggagcata 281  Q
    |||||||||| ||||||||||||||||||  ||||| |||| ||||| |||||||| | |||||||||  |||||||| |  |||||||||||||||||    
T  1856676 tgtttattttaaatctgaaccattgaatccttttttgccacatgtcattcatccaa-gacctaaatggtgtaaatggaacatgtggtaaatggagcata 1856773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 181 - 283
Target Start/End: Original strand, 22536871 - 22536972
Alignment:
Q  181 tttgtttatttttaatctgaaccattgaatcgatttttaccacgtgtcactcatccaaggccctaaatgggataaatggagctggtggtaaatggagcat 280  Q
    |||||||||||| |||||||| ||||||||   |||||||||| ||||| ||||||||  ||||||||||| ||||||||||   ||||||||| |||||    
T  22536871 tttgtttattttaaatctgaatcattgaattt-tttttaccacatgtcattcatccaacaccctaaatggggtaaatggagcatatggtaaatgaagcat 22536969  T
Q  281 acc 283  Q
    |||    
T  22536970 acc 22536972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 284
Target Start/End: Original strand, 50348148 - 50348252
Alignment:
Q  180 ttttgtttatttttaatctgaaccattgaatcgatttttaccacgtgtcactcatccaaggccctaaatgggataaatggagctggtggtaaatggagca 279  Q
    |||| |||||||  ||| ||||||||||||||  |||||| ||| ||||| ||||||||  ||||||||||  |||||| |||  |||||||||||||||    
T  50348148 ttttctttatttaaaatatgaaccattgaatctttttttatcacatgtcattcatccaataccctaaatggagtaaatgaagcatgtggtaaatggagca 50348247  T
Q  280 tacct 284  Q
    |||||    
T  50348248 tacct 50348252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 745 - 799
Target Start/End: Original strand, 11561341 - 11561396
Alignment:
Q  745 ttgagccattgagaacaggtgtaa-ggttataaacttacaccaaatctcatattta 799  Q
    ||||| |||||| ||||||||||| |||||| ||||||||||||||||||||||||    
T  11561341 ttgagtcattgataacaggtgtaaaggttatgaacttacaccaaatctcatattta 11561396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 10032289 - 10032359
Alignment:
Q  180 ttttgtttatttttaatctgaaccattgaatcgatttttaccacgtgtcactcatccaaggccctaaatgg 250  Q
    |||||||||||||||||||||| |||||||||  |||||  ||| ||||| |||||||||  |||||||||    
T  10032289 ttttgtttatttttaatctgaatcattgaatccttttttgtcacatgtcattcatccaagatcctaaatgg 10032359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 211
Target Start/End: Complemental strand, 55203400 - 55203369
Alignment:
Q  180 ttttgtttatttttaatctgaaccattgaatc 211  Q
    ||||||||||||||||||||||||||||||||    
T  55203400 ttttgtttatttttaatctgaaccattgaatc 55203369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 2515589 - 2515658
Alignment:
Q  180 ttttgtttatttttaa-tctgaaccattgaatcgatttttaccacgtgtcactcatccaaggccctaaat 248  Q
    |||| ||||||||||| ||| |||||||||||| |||||| |||  ||||| ||||||||| ||||||||    
T  2515589 ttttatttatttttaaatctcaaccattgaatctatttttcccatatgtcattcatccaagaccctaaat 2515658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 143; Significance: 1e-74; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 12 - 295
Target Start/End: Complemental strand, 48986260 - 48985979
Alignment:
Q  12 tgagatgaacggcggcacaatcggcggttgtcggcgctgatgagaaggaaacgaagaggttctaagggaagctgaaaagagagtgattaacgttcacgta 111  Q
    |||||||||||||| |||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  48986260 tgagatgaacggcgacacaatcggcggttgttggcgctgatgacagggaaacgaagaggttctaagggaagctgaaaagagagtgggtaacgttcacgta 48986161  T
Q  112 tgaaagaagaagagaagagaagcgcgtgtttctcctttaannnnnnnnnnnattnnnnnnnctgatgtttttgtttatttttaatctgaaccattgaatc 211  Q
    ||||||||||||||||||||||||||||||  | || |             |||       ||||||||||||||||||||||||||||| |||||||||    
T  48986160 tgaaagaagaagagaagagaagcgcgtgtt--tgctctctctctcttttttattaaaaaaactgatgtttttgtttatttttaatctgaatcattgaatc 48986063  T
Q  212 gatttttaccacgtgtcactcatccaaggccctaaatgggataaatggagctggtggtaaatggagcatacctacgctcttttt 295  Q
     |||||| |||| ||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||| ||||| ||||    
T  48986062 catttttgccacatgtcactcatccaagaccctaaatgaggtaaatggagctggtggtaaatggagcatacctgcgctcatttt 48985979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 173 - 290
Target Start/End: Original strand, 48990897 - 48991014
Alignment:
Q  173 ctgatgtttttgtttatttttaatctgaaccattgaatcgatttttaccacgtgtcactcatccaaggccctaaatgggataaatggagctggtggtaaa 272  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  48990897 ctgatgtttttgtttatttttaatctgaaccattgaatccatttttgccacatgtcactcatccaagaccctaaatggggtaaatggagctggtggtaaa 48990996  T
Q  273 tggagcatacctacgctc 290  Q
    |||||||||||| |||||    
T  48990997 tggagcatacctgcgctc 48991014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 173 - 291
Target Start/End: Original strand, 25491991 - 25492109
Alignment:
Q  173 ctgatgtttttgtttatttttaatctgaaccattgaatcgatttttaccacgtgtcactcatccaaggccctaaatgggataaatggagctggtggtaaa 272  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||| |||| | ||||||||||||| ||||||||||| || |||||| ||||||||||    
T  25491991 ctgatatttttgtttatttttaatctgaaccattgaatccatttttgccacatatcactcatccaagaccctaaatggggtatatggagttggtggtaaa 25492090  T
Q  273 tggagcatacctacgctct 291  Q
    |||||||||||| ||||||    
T  25492091 tggagcatacctgcgctct 25492109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 180 - 283
Target Start/End: Complemental strand, 52433083 - 52432980
Alignment:
Q  180 ttttgtttatttttaatctgaaccattgaatcgatttttaccacgtgtcactcatccaaggccctaaatgggataaatggagctggtggtaaatggagca 279  Q
    |||||||||||||||||||||||||||||||  |||| | |||||||||| ||||||||| ||||||||||| |||||  ||||| ||||||||||||||    
T  52433083 ttttgtttatttttaatctgaaccattgaattcatttgtgccacgtgtcattcatccaagaccctaaatggggtaaataaagctgatggtaaatggagca 52432984  T
Q  280 tacc 283  Q
    ||||    
T  52432983 tacc 52432980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 177 - 262
Target Start/End: Original strand, 19880730 - 19880814
Alignment:
Q  177 tgtttttgtttatttttaatctgaaccattgaatcgatttttaccacgtgtcactcatccaaggccctaaatgggataaatggagc 262  Q
    ||||||||||| |||||||||| |||||||||||| |||||| |||| ||||| ||||||||| ||||||||||| ||||||||||    
T  19880730 tgtttttgttt-tttttaatcttaaccattgaatccatttttgccacttgtcagtcatccaagaccctaaatggggtaaatggagc 19880814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 2e-64; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 12 - 262
Target Start/End: Complemental strand, 46164675 - 46164427
Alignment:
Q  12 tgagatgaacggcggcacaatcggcggttgtcggcgctgatgagaaggaaacgaagaggttctaagggaagctgaaaagagagtgattaacgttcacgta 111  Q
    ||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  46164675 tgagatgaacggcggcacaatcggcggttgttggcgctgatgacagggaaacgaagaggttctaagggaagctgaaaagagagtgggcaacgttcacgta 46164576  T
Q  112 tgaaagaagaagagaagagaagcgcgtgtttctcctttaannnnnnnnnnnattnnnnnnnctgatgtttttgtttatttttaatctgaaccattgaatc 211  Q
    ||||||||||||||||||||||||||||||  | || |             |||       |||||||||||||||||||||||||||||||||||||||    
T  46164575 tgaaagaagaagagaagagaagcgcgtgtt--tgctctctctctcttttttattaaaaaaactgatgtttttgtttatttttaatctgaaccattgaatc 46164478  T
Q  212 gatttttaccacgtgtcactcatccaaggccctaaatgggataaatggagc 262  Q
     |||||| |||| ||||||||||||||| ||||||||||| ||||||||||    
T  46164477 catttttgccacatgtcactcatccaagaccctaaatggggtaaatggagc 46164427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 173 - 290
Target Start/End: Original strand, 46169311 - 46169428
Alignment:
Q  173 ctgatgtttttgtttatttttaatctgaaccattgaatcgatttttaccacgtgtcactcatccaaggccctaaatgggataaatggagctggtggtaaa 272  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||| |||| ||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  46169311 ctgatgtttttgtttatttttaatctgaatcattgaatccatttttgccacatgtcactcatccaagaccctaaatggggtaaatggagctggtggtaaa 46169410  T
Q  273 tggagcatacctacgctc 290  Q
    |||||||||||| |||||    
T  46169411 tggagcatacctgcgctc 46169428  T

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Target: chr7; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 12 - 140
Target Start/End: Complemental strand, 10091757 - 10091632
Alignment:
Q  12 tgagatgaacggcggcacaatcggcggttgtcggcgctgatgagaaggaaacgaagaggttctaagggaagctgaaaagagagtgattaacgttcacgta 111  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||| | |||||||||||||| |||| || |||| ||||| ||    
T  10091757 tgagatgaacggcggcacaatcgacggttgttggcgctgatgagagggaaacgaagaggttttgagggaagctgaaaacagagcgagtaactttcactta 10091658  T
Q  112 tgaaagaagaagagaagagaagcgcgtgt 140  Q
    |||    |||||||||||||| |||||||    
T  10091657 tga---gagaagagaagagaaacgcgtgt 10091632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 12 - 284
Target Start/End: Original strand, 46513396 - 46513659
Alignment:
Q  12 tgagatgaacggcggcacaatcggcggttgtcggcgctgatgaga-aggaaacgaagaggttctaagggaagctgaaaagagagtgattaacgttcacgt 110  Q
    |||||||||||||| |||||||||||||||| || |||| |||||  ||| |||||||| |||| ||||||||| |||||||||||  ||||||||||||    
T  46513396 tgagatgaacggcgacacaatcggcggttgttggtgctggtgagaggggagacgaagagattctgagggaagctcaaaagagagtg--taacgttcacgt 46513493  T
Q  111 atgaaagaagaagagaagagaagcgcgtgtttctcctttaannnnnnnnnnnattnnnnnnnctgatgtttttgtttatttttaatctgaaccattgaat 210  Q
    |    |||||||||||||| ||||||||| ||||||| ||            |||       |||||| ||||||||||||||||||||||||    |||    
T  46513494 a--ctagaagaagagaagacaagcgcgtg-ttctcctctatttttttttttaattaaaaaagctgatg-ttttgtttatttttaatctgaacc----aat 46513585  T
Q  211 cgatttttaccacgtgtcactcatccaaggccctaaatgggataaatggagctggtggtaaatggagcatacct 284  Q
    |  ||||| |||||||||| ||||||||| |||||||| || ||||| |||||| |||||||| ||||||||||    
T  46513586 cctttttttccacgtgtcattcatccaagtccctaaattgggtaaatagagctgatggtaaatcgagcatacct 46513659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 180 - 283
Target Start/End: Original strand, 10092310 - 10092414
Alignment:
Q  180 ttttgtttatttttaatctgaaccattgaatc-gatttttaccacgtgtcactcatccaaggccctaaatgggataaatggagctggtggtaaatggagc 278  Q
    ||||||||||||||||||| ||||||| || |   ||||| |||| ||||| ||||||||| || |||||||| |||||||||||| |||||||||||||    
T  10092310 ttttgtttatttttaatctcaaccattcaaacattttttttccacatgtcattcatccaagaccttaaatggggtaaatggagctgatggtaaatggagc 10092409  T
Q  279 atacc 283  Q
    |||||    
T  10092410 atacc 10092414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 284
Target Start/End: Original strand, 46582469 - 46582559
Alignment:
Q  194 aatctgaaccattgaatcgatttttaccacgtgtcactcatccaaggccctaaatgggataaatggagctggtggtaaatggagcatacct 284  Q
    ||||| || |||||||||  ||||| |||| ||||  ||||||||| |||||||||| |||||||||||     |||||||||||||||||    
T  46582469 aatctcaatcattgaatctttttttgccacttgtctttcatccaagaccctaaatggtataaatggagcaacatgtaaatggagcatacct 46582559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 180 - 285
Target Start/End: Original strand, 6356380 - 6356485
Alignment:
Q  180 ttttgtttatttttaatctgaaccattgaatcgatttttaccacgtgtcactcatccaaggccctaaatgggataaatggagctggtggtaaatggagca 279  Q
    ||||| ||||||| ||||||||| |||||||||||||||||||| ||||| ||||||||| || ||||||   |||||||  |  |||||||||||||||    
T  6356380 ttttgattattttaaatctgaacaattgaatcgatttttaccacatgtcattcatccaagaccttaaatgtagtaaatgggacatgtggtaaatggagca 6356479  T
Q  280 taccta 285  Q
    ||||||    
T  6356480 taccta 6356485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 180 - 281
Target Start/End: Complemental strand, 34374060 - 34373959
Alignment:
Q  180 ttttgtttatttttaatctgaaccattgaatcgatttttaccacgtgtcactcatccaaggccctaaatgggataaatggagctggtggtaaatggagca 279  Q
    |||| |||||||||||||| ||||||||||||  ||||| |||| ||||| |||||||||   |||||| ||||||||||| | | ||||||||||||||    
T  34374060 ttttatttatttttaatctaaaccattgaatcattttttgccacatgtcattcatccaagattctaaattggataaatggaaccgatggtaaatggagca 34373961  T
Q  280 ta 281  Q
    ||    
T  34373960 ta 34373959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 262
Target Start/End: Original strand, 34374791 - 34374872
Alignment:
Q  180 ttttgtttatttttaatctgaaccattgaatcgatttttaccacgtgtcactcatccaaggccctaaatgggataaatggagc 262  Q
    |||||||||||||||||||||||||||||||   ||||| |||||||||| ||||| ||| |  || ||||| ||||||||||    
T  34374791 ttttgtttatttttaatctgaaccattgaat-atttttttccacgtgtcattcatctaagactttagatggggtaaatggagc 34374872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 11221 - 11139
Alignment:
Q  180 ttttgtttatttttaatctgaaccattgaatcgattttt-accacgtgtcactcatccaaggccctaaatgggataaatggag 261  Q
    ||||| ||||||||||||||||||||||||||  ||||| ||||| ||||| ||||||| | ||||||||||| |||||||||    
T  11221 ttttgattatttttaatctgaaccattgaatcctttttttaccacatgtcattcatccatgaccctaaatggggtaaatggag 11139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 282
Target Start/End: Original strand, 34227231 - 34227332
Alignment:
Q  180 ttttgtttatttttaatctgaaccattgaatcgatttttaccacgtgtcactcatccaaggccctaaatgggataaatggagctggtggtaaatggagca 279  Q
    |||||||  |||| ||||||||||||||| |   |||||||||| ||||| |||||||| | |||||||||  ||||||||||  || ||||||||||||    
T  34227231 ttttgttgcttttaaatctgaaccattgattttttttttaccacatgtcattcatccaa-gtcctaaatggactaaatggagcatgtagtaaatggagca 34227329  T
Q  280 tac 282  Q
    |||    
T  34227330 tac 34227332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 18259216 - 18259285
Alignment:
Q  180 ttttgtttatttttaa-tctgaaccattgaatcgatttttaccacgtgtcactcatccaaggccctaaat 248  Q
    |||||||||||||||| | ||||||||||||||  ||||| |||| ||||| |||||||||  |||||||    
T  18259216 ttttgtttatttttaaatatgaaccattgaatctttttttgccacatgtcattcatccaagatcctaaat 18259285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 284
Target Start/End: Original strand, 33669540 - 33669645
Alignment:
Q  180 ttttgtttatttttaa-tctgaaccattgaatcgatttttaccacgtgtcactcatccaaggccctaaatgggataaatggagctggtggtaaatggagc 278  Q
    ||||||||||||| || | |||||||||||||   ||||| |||| ||||| ||||  ||| |||||||||   ||||||||||  |||||||||||| |    
T  33669540 ttttgtttattttaaaatatgaaccattgaattcttttttgccacatgtcattcatttaagaccctaaatgaactaaatggagcatgtggtaaatggaac 33669639  T
Q  279 atacct 284  Q
    ||||||    
T  33669640 atacct 33669645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 261
Target Start/End: Complemental strand, 21632641 - 21632565
Alignment:
Q  186 ttatttttaatctgaaccattgaa-tcgatttttaccacgtgtcactcatccaaggccctaaatgggataaatggag 261  Q
    |||||||||||||||||||||||| ||  | |||||||  ||||| ||||||| | ||||||||||| |||||||||    
T  21632641 ttatttttaatctgaaccattgaattctttatttaccagatgtcattcatccatgaccctaaatggggtaaatggag 21632565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 261
Target Start/End: Complemental strand, 21640888 - 21640812
Alignment:
Q  186 ttatttttaatctgaaccattgaa-tcgatttttaccacgtgtcactcatccaaggccctaaatgggataaatggag 261  Q
    |||||||||||||||||||||||| ||  | |||||||  ||||| ||||||| | ||||||||||| |||||||||    
T  21640888 ttatttttaatctgaaccattgaattctttatttaccagatgtcattcatccatgaccctaaatggggtaaatggag 21640812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 283
Target Start/End: Complemental strand, 8740537 - 8740448
Alignment:
Q  194 aatctgaaccattgaatcgatttttaccacgtgtcactcatccaaggccctaaatgggataaatggagctggtggtaaatggagcatacc 283  Q
    ||||| |||||||||||   ||||  |||| ||||| ||||||||  ||||||||||| ||||||||||   |||||||| |||||||||    
T  8740537 aatctcaaccattgaatgttttttggccacatgtcattcatccaataccctaaatggggtaaatggagcatatggtaaattgagcatacc 8740448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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