View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14163_high_14 (Length: 261)
Name: NF14163_high_14
Description: NF14163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14163_high_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 3455696 - 3455444
Alignment:
| Q |
1 |
cttgtgtgtagctggggttatcaagaccatgagattaggctgtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacaacattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3455696 |
cttgtgtgtagctggggttatcaagaccatgagattaggctgtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacagcattg |
3455597 |
T |
|
| Q |
101 |
cagatgagattgccatctatgctgtgggtgaaggaattgatggacagatttttgtggagcataatgttactaatatgtctgtcaaggttgatatgcctaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3455596 |
cagatgagattgccatctatgctgtgggtgaaggaattgatggacaaatttttgttgagcataatgttactaatatgtctgtcaaggttgatatgcctaa |
3455497 |
T |
|
| Q |
201 |
ctttgtggatttgaatgagtctagtggggaagatgaagacaatttgatgatgt |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3455496 |
ctttgtggatttgaatgagtctagtggggaagatgaagacaatttgatgatgt |
3455444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 46238961 - 46239213
Alignment:
| Q |
1 |
cttgtgtgtagctggggttatcaagaccatgagattaggctgtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacaacattg |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46238961 |
cttgtttgtagctggggttatcaagaccatgagattaggctgtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacaacattg |
46239060 |
T |
|
| Q |
101 |
cagatgagattgccatctatgctgtgggtgaaggaattgatggacagatttttgtggagcataatgttactaatatgtctgtcaaggttgatatgcctaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46239061 |
cagatgagattgccatctatgctgtgggtgaaggaattgatggacaaatttttgttgagcataatgttactaatatgtctgtcaaggttgatatgcctaa |
46239160 |
T |
|
| Q |
201 |
ctttgtggatttgaatgagtctagtggggaagatgaagacaatttgatgatgt |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46239161 |
ctttgtggatttgaatgagtctagtggggaagatgaagacaatttgatgatgt |
46239213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University