View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14163_high_4 (Length: 524)
Name: NF14163_high_4
Description: NF14163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14163_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 451; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 11 - 505
Target Start/End: Complemental strand, 43477586 - 43477077
Alignment:
| Q |
11 |
cacagataaatgtgacaattatagagataaaggattggataaaacttagccttatctgttagaggattggatctaaattagctagctagccctatccatt |
110 |
Q |
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| T |
43477586 |
cacagataaatgtgacaattatagagataaaggattggataaaacttagccttatctgttagaggattggatctaaattagctagctagccctatccatt |
43477487 |
T |
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| Q |
111 |
atattcaatatattttgtcataatcgctttcttat----catacaataatgattctatttgtcttcagaatctaggttaacccttcgttaagaatgtctt |
206 |
Q |
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| T |
43477486 |
atattcaatatattttgtcataatcgctttcttaattaccatacaataatgattctatttgtcttcagaatctaggttaacccttcgttaagaatgtctt |
43477387 |
T |
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| Q |
207 |
tgttttttgaaaagaaaagaatgtcttagttgttagttagtggaaaatacatgagattgttcattataatta-----------aacggattttgttttag |
295 |
Q |
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| T |
43477386 |
tgttttttgaaaagaaaagaatgtcttagttgttagttagtggaaaatacatgagattgttcattataattaagtttttttttaacggattttgttttag |
43477287 |
T |
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| Q |
296 |
ttatgagtatgactattagattgagcaaaagtttaccagctcaataatcattaagccacgcagacctaccttgtatttcttttggcttttttatcaaatc |
395 |
Q |
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| T |
43477286 |
ttatgagtatgactattagattgagcaaaagtttaccagctcaataatcattaagccacgcagacctaccttgtatttcttttggcttttttatcaaatc |
43477187 |
T |
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| Q |
396 |
tttttggacaatactatgcttttatctgaaatttggataaagatgcatattattgattatcacccttgcaatctccactttgtgatggtttctagctagt |
495 |
Q |
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| T |
43477186 |
tttttggacaatactatgcttttatctgaaatttggataaagatgcatattattgattatcacccttgcaatctccactttgtgatggtttctagctagt |
43477087 |
T |
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| Q |
496 |
atcacaagtt |
505 |
Q |
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| T |
43477086 |
atcacaagtt |
43477077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 43477788 - 43477740
Alignment:
| Q |
19 |
aatgtgacaattatagagataaaggattggataaaacttagccttatct |
67 |
Q |
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| T |
43477788 |
aatgtgacaattatagagataaaggattggataaaactcagccttatct |
43477740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 43468363 - 43468316
Alignment:
| Q |
163 |
atttgtcttcagaatctaggttaacccttcgttaagaatgtctttgtt |
210 |
Q |
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| T |
43468363 |
atttgtcttcagaacctaggttaacccttctttaagaatgtctgtgtt |
43468316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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