View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14163_high_6 (Length: 496)
Name: NF14163_high_6
Description: NF14163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14163_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 443; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 7238627 - 7239105
Alignment:
| Q |
1 |
tcttccaatctttcaggaaataggttcattgtaaacccgaataattacgattagaactgaaacaaaaccatgctttgttcataatgttaccttcttcgag |
100 |
Q |
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| T |
7238627 |
tcttccaatctttcaggaaataggttcattgtaaacccgaataattacgattagaactgaaacaaaaccatgctttgttcatgatgttaccttcttcgac |
7238726 |
T |
|
| Q |
101 |
aatatactgtcacgaataaagaaatggtgtggagtgtcactgacagtgccaaattgctttaaacttacaaatttgctcataatttcgtctttgaaatttg |
200 |
Q |
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| T |
7238727 |
aatatactgtcacgaataaagaaatggtgtggagtgtcactgacagtgccaaattgctttaaacttacaaatttgctcataatttcgtctttgaaattta |
7238826 |
T |
|
| Q |
201 |
tatggtatgaactgctgctacaattgcataagggatggttgaaattagatggaaatgaaatggctgaaataggttggacaattttcatcaaatttcagaa |
300 |
Q |
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| T |
7238827 |
tatggtatgaactgctactataattgcataagggatggttgaaattagatggagatgaaatggctgaaataggttggacaatttccatcaaatttcagaa |
7238926 |
T |
|
| Q |
301 |
ataaaaatcccatttaaaactaattagaatctacttaggaacatatgttttgattgtttagctgaaattaaaattcatgagtccgacattggttgttttg |
400 |
Q |
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| T |
7238927 |
ataaaaatcccatttaaaactaattagaatctacttaggaacatatgttttgattgtttagctgaaattaaaattcatgagtcccacattggttgttttg |
7239026 |
T |
|
| Q |
401 |
taaatgaaaaggagcaagttacctataaattaaatgagggacaagattgtttctataatgtccatgagaatcgaaaaat |
479 |
Q |
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| T |
7239027 |
taaatgaaaaggagcaagttacctataaattaaatgagggacaagattgattctataatgtccatgagaatcgaaaaat |
7239105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 287 - 420
Target Start/End: Original strand, 7240599 - 7240731
Alignment:
| Q |
287 |
atcaaatttcagaaataaaaatcccatttaaaactaattagaatctacttaggaacatatgttttgattgtttagctgaaattaaaattcatgagtccga |
386 |
Q |
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|||||||||||||||||||||| | ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||| | |
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| T |
7240599 |
atcaaatttcagaaataaaaattc-atttaaaactatttagaatctacttaggagcatatgttttgattgttgagctgaaattaaaaatcatgagtccca |
7240697 |
T |
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| Q |
387 |
cattggttgttttgtaaatgaaaaggagcaagtt |
420 |
Q |
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| T |
7240698 |
catcagttgtttcgtatatgaaaaggaacaagtt |
7240731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 219 - 278
Target Start/End: Original strand, 7240513 - 7240572
Alignment:
| Q |
219 |
tacaattgcataagggatggttgaaattagatggaaatgaaatggctgaaataggttgga |
278 |
Q |
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| T |
7240513 |
tacaattgcataagggatgattgaaatgagatagaaatgaaatggctgaaatagattgga |
7240572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 41425855 - 41425791
Alignment:
| Q |
115 |
aataaagaaatggtgtggagtgtcactgacagtgccaaattgctttaaacttacaaatttgctca |
179 |
Q |
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| T |
41425855 |
aataaagtaatggtctgaagtgtcactgatagtgtcaaattgcttaaaacttccaagttttctca |
41425791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 5839798 - 5839891
Alignment:
| Q |
113 |
cgaataaagaaatggtgtggagtgtcactgacagtgccaaattgctttaaacttacaaatttgctcataatttcgtctttgaaatttgtatggt |
206 |
Q |
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| T |
5839798 |
cgaacaaagtaatggtgtttagtgtcactggcaatatcgaatttcttaaaacttccaaatttcctcagaatttcatctttgaaatttgcatggt |
5839891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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