View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14163_high_7 (Length: 417)
Name: NF14163_high_7
Description: NF14163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14163_high_7 |
 | |
|
| [»] scaffold0003 (2 HSPs) |
| |
|
| [»] chr6 (5 HSPs) |
| |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0003 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 28 - 417
Target Start/End: Original strand, 41944 - 42334
Alignment:
| Q |
28 |
aattagcagaattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaaagaaggaaataatcc |
127 |
Q |
| |
|
|||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
41944 |
aattagcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacaaaaattgcagatttaaccataaagaatgaaggaaataatcg |
42043 |
T |
|
| Q |
128 |
atcatagaatctaataaagtaatataacataacaacagacacagaggcatcaagttagacatattcgacaacaaagatatcttcctgtcaaacaacattt |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||| |||||||| ||| ||||||||||||||| |||||||| |
|
|
| T |
42044 |
atcatagaatctaataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgacaataaatatatcttcctgtcaatcaacattt |
42143 |
T |
|
| Q |
228 |
gattctaaaactattgcttcatcctatggtagtggttttaa-nnnnnnnaacatagaacaccaaactctaagaagattcaaaaatcaagtgaactcaatg |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42144 |
gattctaaaactattgcttcatcctatggtagtggttttaattttttttaacatagaacaccaaactctaagaagattcaaaaagcaagtgaactcaatg |
42243 |
T |
|
| Q |
327 |
ttctcatagcatctttgtatagattttcaagctcactttgtaacactaaactcaaattatttgccatgattagaacaaaaaccaaaacaac |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
42244 |
ttctcatagcatctttgtatagattttcaagctcactttgtaacactaaactcaaatgattttccatgattagaacaaaaaccaaaacaac |
42334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 28 - 417
Target Start/End: Original strand, 35274 - 35663
Alignment:
| Q |
28 |
aattagcagaattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaaagaaggaaataatcc |
127 |
Q |
| |
|
|||||||||||||||||||| |||||||||| || |||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
35274 |
aattagcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacagaaattgcagatttaaccataaagaatgaaggaaataatcg |
35373 |
T |
|
| Q |
128 |
atcatagaatctaataaagtaatataacataacaacagacacagaggcatcaagttagacatattcgacaacaaagatatcttcctgtcaaacaacattt |
227 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||| |||| |||||||||||| |||||||| ||| ||||||||||||||| |||||||| |
|
|
| T |
35374 |
atcatagaatataataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgacaataaatatatcttcctgtcaatcaacattt |
35473 |
T |
|
| Q |
228 |
gattctaaaactattgcttcatcctatggtagtggttttaannnnnnnaacatagaacaccaaactctaagaagattcaaaaatcaagtgaactcaatgt |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
35474 |
gattctaaaactattgcttcatcctatggtagtggttttaatttttttaacatagaacaccaaactcatagaagattcaaaaagcaagtgaactcaatgt |
35573 |
T |
|
| Q |
328 |
tctcatagcatctttgtatagattttcaagctcactttgtaacactaaactcaaattatttgccatgattagaacaaaaaccaaaacaac |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
35574 |
tctcatagcatctttgtatagattttcaagctcactttgtaacactaaactcaaatgattttccatgattagaacaaaaaccaaaacaac |
35663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 28 - 417
Target Start/End: Complemental strand, 27445414 - 27445024
Alignment:
| Q |
28 |
aattagcagaattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaaagaaggaaataatcc |
127 |
Q |
| |
|
|||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
27445414 |
aattagcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacaaaaattgcagatttaaccataaagaatgaaggaaataatcg |
27445315 |
T |
|
| Q |
128 |
atcatagaatctaataaagtaatataacataacaacagacacagaggcatcaagttagacatattcgacaacaaagatatcttcctgtcaaacaacattt |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||| |||||||| ||| ||||||||||||||| |||||||| |
|
|
| T |
27445314 |
atcatagaatctaataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgacaataaatatatcttcctgtcaatcaacattt |
27445215 |
T |
|
| Q |
228 |
gattctaaaactattgcttcatcctatggtagtggttttaa-nnnnnnnaacatagaacaccaaactctaagaagattcaaaaatcaagtgaactcaatg |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27445214 |
gattctaaaactattgcttcatcctatggtagtggttttaattttttttaacatagaacaccaaactctaagaagattcaaaaagcaagtgaactcaatg |
27445115 |
T |
|
| Q |
327 |
ttctcatagcatctttgtatagattttcaagctcactttgtaacactaaactcaaattatttgccatgattagaacaaaaaccaaaacaac |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
27445114 |
ttctcatagcatctttgtatagattttcaagctcactttgtaacactaaactcaaatgattttccatgattagaacaaaaaccaaaacaac |
27445024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 37 - 417
Target Start/End: Original strand, 20909590 - 20909958
Alignment:
| Q |
37 |
aattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaaagaaggaaa-taatccatcataga |
135 |
Q |
| |
|
||||||||||| |||||||||| || ||||| |||||||||| ||||| ||| || |||||||| || ||| | | | ||||||| |||| |||||||| |
|
|
| T |
20909590 |
aattcttattgtgcataggagcaaatatgatgttttggaatcatcaaataaagat-gcagattttactatacatatataaggaaaataattaatcataga |
20909688 |
T |
|
| Q |
136 |
atctaataaagtaatataacataacaacagacacagaggcatcaagttagacatattcgacaacaaagatatcttcctgtcaaacaacatttgattctaa |
235 |
Q |
| |
|
|| | |||||||||||||||||||||| | |||||| |||||||||| |||| | ||| | ||| ||| ||||||||||| ||||||| |||||||||| |
|
|
| T |
20909689 |
atatgataaagtaatataacataacaataaacacagtggcatcaagtaagacgtcttctattacagagagatcttcctgtcgaacaacacttgattctaa |
20909788 |
T |
|
| Q |
236 |
aactattgcttcatcctatggtagtggttttaannnnnnnaacatagaacaccaaactctaagaagattcaaaaatcaagtgaactcaatgttctcatag |
335 |
Q |
| |
|
|||| |||||||||| ||||| |||||||| | ||| |||||||||||||| |||||||||||||||| |||||||| ||||||||||| ||| |
|
|
| T |
20909789 |
aactcttgcttcatcatatggcagtggtttaattttttctaacttagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttctcgtag |
20909888 |
T |
|
| Q |
336 |
catctttgtatagattttcaagctcactttgtaacactaaactcaaattatttgccatgattagaacaaaaaccaaaacaac |
417 |
Q |
| |
|
| ||||| || ||||||| || ||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20909889 |
cctctttcta------ttcaagc------tgaaacactaaatactaattatttgccatgattagaacaaaaaccaaaacaac |
20909958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 37 - 417
Target Start/End: Original strand, 20924038 - 20924406
Alignment:
| Q |
37 |
aattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaaagaaggaaa-taatccatcataga |
135 |
Q |
| |
|
||||||||||| |||||||||| || ||||| |||||||||| ||||| ||| || |||||||| || ||| | | | ||||||| |||| |||||||| |
|
|
| T |
20924038 |
aattcttattgtgcataggagcaaatatgatgttttggaatcatcaaataaagat-gcagattttactatacatatataaggaaaataattaatcataga |
20924136 |
T |
|
| Q |
136 |
atctaataaagtaatataacataacaacagacacagaggcatcaagttagacatattcgacaacaaagatatcttcctgtcaaacaacatttgattctaa |
235 |
Q |
| |
|
|| | |||||||||||||||||||||| | |||||| |||||||||| |||| | ||| | ||| ||| ||||||||||| ||||||| |||||||||| |
|
|
| T |
20924137 |
atatgataaagtaatataacataacaataaacacagtggcatcaagtaagacgtcttctattacagagagatcttcctgtcgaacaacacttgattctaa |
20924236 |
T |
|
| Q |
236 |
aactattgcttcatcctatggtagtggttttaannnnnnnaacatagaacaccaaactctaagaagattcaaaaatcaagtgaactcaatgttctcatag |
335 |
Q |
| |
|
|||| |||||||||| ||||| |||||||| | ||| |||||||||||||| |||||||||||||||| |||||||| ||||||||||| ||| |
|
|
| T |
20924237 |
aactcttgcttcatcatatggcagtggtttaattttttctaacttagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttctcgtag |
20924336 |
T |
|
| Q |
336 |
catctttgtatagattttcaagctcactttgtaacactaaactcaaattatttgccatgattagaacaaaaaccaaaacaac |
417 |
Q |
| |
|
| ||||| || ||||||| || ||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20924337 |
cctctttcta------ttcaagc------tgaaacactaaatactaattatttgccatgattagaacaaaaaccaaaacaac |
20924406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 266
Target Start/End: Complemental strand, 22081938 - 22081870
Alignment:
| Q |
198 |
acaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctatggtagtggtttt |
266 |
Q |
| |
|
||||||||| |||| ||||||||||| |||||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
22081938 |
acaaagataacttcatgtcaaacaacgcttgattctaaaactcctacttcatcctatgtaagtggtttt |
22081870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 15433401 - 15433465
Alignment:
| Q |
202 |
agatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctatggtagtggtttt |
266 |
Q |
| |
|
||||||||| ||| ||||| ||| ||||||| ||||||| | || ||||||||||||||||||| |
|
|
| T |
15433401 |
agatatcttactgacaaaccacacttgattccaaaactactattttatcctatggtagtggtttt |
15433465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 202 - 417
Target Start/End: Complemental strand, 43227307 - 43227093
Alignment:
| Q |
202 |
agatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctatggtagtggttttaannnnnnnaacatagaacaccaaactctaagaag |
301 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||| | || | |
|
|
| T |
43227307 |
agatatcttcctgtcaaagaacacttgattctaaaactcttgcttcatcctatggtagtagttttaatttttttaacatagaacaccaaactcaatga-g |
43227209 |
T |
|
| Q |
302 |
attcaaaaatcaagtgaactcaatgttctcatagcatctttgtatagattttcaagctcactttgtaacactaaactcaaattatttgccatgattagaa |
401 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||| ||| |||||||||||||||||||| ||| ||||||||||||||||||| |||| |
|
|
| T |
43227208 |
attcaaaaatcaagtgaattcaatgttctcatagcatctttctatatattctcaagctcactttgtaacaccaaattcaaattatttgccatgataagaa |
43227109 |
T |
|
| Q |
402 |
caaaaaccaaaacaac |
417 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
43227108 |
caaaaaccaaaacaac |
43227093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 37 - 417
Target Start/End: Original strand, 42312704 - 42313073
Alignment:
| Q |
37 |
aattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaaagaaggaaa-taatccatcataga |
135 |
Q |
| |
|
||||||||||| |||||||||| || |||| |||||||||| ||||| ||| || ||||||||||| ||| | | | ||||||| |||| |||||||| |
|
|
| T |
42312704 |
aattcttattgtgcataggagcaaacgtgatgttttggaatcatcaaataaagat-gcagatttaactatacatatataaggaaaataattaatcataga |
42312802 |
T |
|
| Q |
136 |
atctaataaagtaatataacataacaacagacacagaggcatcaagttagacatattcgacaacaaagatatcttcctgtcaaacaacatttgattctaa |
235 |
Q |
| |
|
|| | |||||||||||||| ||||||| |||||| |||||||||| |||| | ||||| ||| ||| ||||||||||| ||||||| |||||||||| |
|
|
| T |
42312803 |
atatgataaagtaatataaaataacaatgaacacagtggcatcaagtaagacgtcttcgattacagagagatcttcctgtcgaacaacacttgattctaa |
42312902 |
T |
|
| Q |
236 |
aactattgcttcatcctatggtagtggtttta-annnnnnnaacatagaacaccaaactctaagaagattcaaaaatcaagtgaactcaatgttctcata |
334 |
Q |
| |
|
||| |||||||||| ||||| |||||||| | |||||||||||||||||| ||||||||| |||||| |||||||| ||||||| ||| || |
|
|
| T |
42312903 |
tactcttgcttcatcgtatggcagtggtttaatttttttctaacatagaacaccaaactataagaagatacaaaaagcaagtgaattcaatgtactcgta |
42313002 |
T |
|
| Q |
335 |
gcatctttgtatagattttcaagctcactttgtaacactaaactcaaattatttgccatgattagaacaaaaaccaaaacaac |
417 |
Q |
| |
|
|| ||||| || ||||||| || ||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42313003 |
gcctctttcta------ttcaagc------tgaaacactaaattctaattatttgccatgattagaacaaaaaccaaaacaac |
42313073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 37 - 417
Target Start/End: Complemental strand, 11504770 - 11504380
Alignment:
| Q |
37 |
aattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaa-agaaggaaataatccatcataga |
135 |
Q |
| |
|
||||||||||| ||||||||| || || || |||| ||||| ||||| | | |||||||||||||| ||||| || | ||||||||||| |||| ||| |
|
|
| T |
11504770 |
aattcttattgtgcataggagtaaacataatgttttagaatcatcaaaaacagattgcagatttaactataaaaaatataaggaaataattaatca-aga |
11504672 |
T |
|
| Q |
136 |
atctaataaagtaatataacataacaacaga--------cacagaggcatcaagttagacatattcgacaacaaagatatcttcctgtcaaacaacattt |
227 |
Q |
| |
|
|| | |||||||||| ||||||||||| | | | ||| |||||||||| |||| | ||||| |||||||||||||| |||||||||||| || |
|
|
| T |
11504671 |
atatgataaagtaatctaacataacaataaaacaataaacgcagtggcatcaagtgagacgtcttcgattacaaagatatcttcatgtcaaacaacactt |
11504572 |
T |
|
| Q |
228 |
gattctaaaactattgcttcatcctatggtagtggttttaannnnnnn-aacatagaacaccaaactctaagaagattcaaaaatcaagtgaactcaat- |
325 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||| ||| ||||||||| |||||||| | || |
|
|
| T |
11504571 |
gattctaaaactcttgcttcatcatatggtagtggttttaaatttttttaacatagaacaccaaactctaggaaaattcaaaaagcaagtgaattgtatt |
11504472 |
T |
|
| Q |
326 |
gttctcatagcatctttgtatagattttcaagctcactttgtaacactaaactcaaattatttgccatgattagaacaaaaaccaaaacaac |
417 |
Q |
| |
|
| ||||||||| ||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11504471 |
ggtctcatagcctctttctatagattttcaagctcactttgaaacactgaactcaaattatttgccatgattagaacaaaaaccataacaac |
11504380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 141 - 417
Target Start/End: Original strand, 18939752 - 18940025
Alignment:
| Q |
141 |
ataaagtaatataacataacaacagacacagaggcatcaagttagacatattcgacaacaaagatatcttcctgtcaaacaacatttgattctaaaacta |
240 |
Q |
| |
|
|||||||| | ||||||||||| | |||||| ||||||| | |||| | ||||| | |||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
18939752 |
ataaagtattctaacataacaataaacacagttgcatcaattaagacgtcttcgatat-aaagatatcttccttccaaacaacacttgattctaaaactc |
18939850 |
T |
|
| Q |
241 |
ttgcttcatcctatggtagtggttttaannnnnnnaacatagaacaccaaactctaagaagattcaaaaatcaagtgaactcaat-gttctcatagcatc |
339 |
Q |
| |
|
||| |||||| |||| ||||| |||| |||||||||||| || ||||||||| ||||||||| |||||||| | | | ||||||||| || |
|
|
| T |
18939851 |
ttgattcatcatatgttagtgttttt---ttttttaacatagaacacaaacctctaagaaaattcaaaaagcaagtgaattgttttggtctcatagcctc |
18939947 |
T |
|
| Q |
340 |
tttgtatagattttcaagctcactttgtaacactaaactcaaattatttgccatgattagaacaaaaaccaaaacaac |
417 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18939948 |
tttctatagattttcaagctcactttgaaacaccgaactcaaattatttgccatgattagaacaaaaaccaaaacaac |
18940025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 4e-48; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 276 - 417
Target Start/End: Original strand, 52310804 - 52310944
Alignment:
| Q |
276 |
aacatagaacaccaaactctaagaagattcaaaaatcaagtgaactcaatgttctcatagcatctttgtatagattttcaagctcactttgtaacactaa |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||| ||||| ||||||||||||||||||||||| ||||| || |
|
|
| T |
52310804 |
aacatagaacaccaaactctaagaagattcaaaaagaaagtgaatttaatgttctcatagcctctttctatagattttcaagctcactttgaaacaccaa |
52310903 |
T |
|
| Q |
376 |
actcaaattatttgccatgattagaacaaaaaccaaaacaac |
417 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
52310904 |
a-tcaaattatttgtcatgattagaacaaaaaccaaaacaac |
52310944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 276 - 415
Target Start/End: Complemental strand, 53690093 - 53689955
Alignment:
| Q |
276 |
aacatagaacaccaaactctaagaagattcaaaaatcaagtgaactcaatgttctcatagcatctttgtatagattttcaagctcactttgtaacactaa |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||| || |
|
|
| T |
53690093 |
aacatagaacaccaaactctaagaagattcaaaaagaaagtgaattcaatgttctcatagcatctttctatagattttcaagctcactttgaaacaccaa |
53689994 |
T |
|
| Q |
376 |
actcaaattatttgccatgattagaacaaaaaccaaaaca |
415 |
Q |
| |
|
| || |||||||| ||||||||||||||||||||||||| |
|
|
| T |
53689993 |
a-tctaattatttttcatgattagaacaaaaaccaaaaca |
53689955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 417
Target Start/End: Complemental strand, 31688793 - 31688761
Alignment:
| Q |
385 |
atttgccatgattagaacaaaaaccaaaacaac |
417 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
31688793 |
attttccatgattagaacaaaaaccaaaacaac |
31688761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 37 - 417
Target Start/End: Original strand, 41326488 - 41326852
Alignment:
| Q |
37 |
aattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaaagaaggaaa-taatccatcataga |
135 |
Q |
| |
|
||||||||||| |||||||||| |||||| |||||||||| ||||| ||| || |||||||| | ||| | | | ||||||| |||| |||||||| |
|
|
| T |
41326488 |
aattcttattgtgcataggagc---aatgatgttttggaatcatcaaataaagat-gcagatttt-ctatacatatataaggaaaataattaatcataga |
41326582 |
T |
|
| Q |
136 |
atctaataaagtaatataacataacaacagacacagaggcatcaagttagacatattcgacaacaaagatatcttcctgtcaaacaacatttgattctaa |
235 |
Q |
| |
|
|| | |||||||||||||||||||||| | |||||| |||||||||| |||| | ||||| ||| ||| ||||||||||| ||||| | |||||||||| |
|
|
| T |
41326583 |
atatgataaagtaatataacataacaataaacacagtggcatcaagtaagacgtcttcgattacagagagatcttcctgtcgaacaaaacttgattctaa |
41326682 |
T |
|
| Q |
236 |
aactattgcttcatcctatggtagtggtttta-annnnnnnaacatagaacaccaaactctaagaagattcaaaaatcaagtgaactcaatgttctcata |
334 |
Q |
| |
|
|||| |||||||||| ||||| |||||||| | |||||||||||||||||| |||||||||||||||| |||||||| |||||||||| ||| |
|
|
| T |
41326683 |
aactcttgcttcatcatatggcagtggtttaatttttttctaacatagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttcttata |
41326782 |
T |
|
| Q |
335 |
gcatctttgtatagattttcaagctcactttgtaacactaaactcaaattatttgccatgattagaacaaaaaccaaaacaac |
417 |
Q |
| |
|
|| ||||| || ||||||| || ||||||||| || ||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
41326783 |
gcctctttcta------ttcaagc------tgaaacactaaattctaattatttgccatgaatagaac-aaaaccaaaacaac |
41326852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 276 - 417
Target Start/End: Original strand, 7828266 - 7828408
Alignment:
| Q |
276 |
aacatagaacaccaaactctaagaagattcaaaaatcaagtgaactcaat-gttctcatagcatctttgtatagattttcaagctcactttgtaacacta |
374 |
Q |
| |
|
|||||||||||| || ||||||||| ||||||||| |||||||| | | | ||||||||| ||||| |||||||| |||||||||||| | |||| | |
|
|
| T |
7828266 |
aacatagaacacaaacctctaagaaaattcaaaaagcaagtgaattgttttggtctcatagcctctttctatagattgtcaagctcacttcgaaacattg |
7828365 |
T |
|
| Q |
375 |
aactcaaattatttgccatgattagaacaaaaaccaaaacaac |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7828366 |
aactcaaattatttgccatgattagaacaaaaaccaaaacaac |
7828408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 266
Target Start/End: Original strand, 37618034 - 37618102
Alignment:
| Q |
198 |
acaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctatggtagtggtttt |
266 |
Q |
| |
|
||||||||| |||| ||||||||||| |||||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
37618034 |
acaaagataacttcatgtcaaacaacgcttgattctaaaactccttcttcatcctatgtaagtggtttt |
37618102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 30180338 - 30180301
Alignment:
| Q |
202 |
agatatcttcctgtcaaacaacatttgattctaaaact |
239 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
30180338 |
agatatcttcttgtcaaacaacaattgattctaaaact |
30180301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 37618531 - 37618559
Alignment:
| Q |
1 |
accactacgaatccagagaacctggtgaa |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
37618531 |
accactacgaatccagagaacctggtgaa |
37618559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University