View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14163_low_12 (Length: 359)
Name: NF14163_low_12
Description: NF14163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14163_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 349
Target Start/End: Original strand, 33772512 - 33772843
Alignment:
| Q |
18 |
tatattttgaaggtctatgatggggacattgaacttggaagatgggtcactttcatgagtggagttcatgttcaaattcaaattgggataatggaacata |
117 |
Q |
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| T |
33772512 |
tatattttgaaggtctatgatggggacattgaacttggaagatgggtcactttcatgagtggagttcatgttcaagttcaaattgggataatggaacata |
33772611 |
T |
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| Q |
118 |
cgtgggatctttgtcacacatattccagattccaagagacctttcacaccaacttttgattcttcaaaggctttcacttcagctaccctgtcatatgtgg |
217 |
Q |
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| T |
33772612 |
cgtgggatctttgtcacacatattccagattccaagagacctttcacaccaacttttgattcttcaaaggctttcacttcagctaccctgtcatatgtgg |
33772711 |
T |
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| Q |
218 |
aagtggagcttttattttcctctgactcaaccatgatgataaagaagcaaaaaatacaatgttcactctttctctcttgaataaggctctcttatgcaag |
317 |
Q |
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| T |
33772712 |
aagtggagcttttattttcctctgactcaaccatgatgataaagaagcagaaaatacaatgttcactctttctcttttgaataaggttctcttgtgcaag |
33772811 |
T |
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| Q |
318 |
actatgtttcttgattctttttatgttctgtg |
349 |
Q |
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| T |
33772812 |
actatgtttcttgattctttttatgttgtgtg |
33772843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 33769230 - 33769426
Alignment:
| Q |
18 |
tatattttgaaggtctatgatggggacattgaacttggaagatgggtcactttcatgagtggagttcatgttcaaattcaaattgggataatggaacata |
117 |
Q |
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| T |
33769230 |
tatatcttgaaggtctatgatagggacactgaacttggaagatgcttcactttcatgatcagagttcaagttca------aattgggagaatgaaacata |
33769323 |
T |
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| Q |
118 |
cgtgggatctttgtcacacatattccagattccaagagacctttcacaccaacttttgattcttcaaaggctttcacttcagctaccctgtcatatgtgg |
217 |
Q |
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| T |
33769324 |
cgtgggatctttgtcgtccatattccagattctaagaggcctttcacgccggtttttgattcttcaaaggctttcacttctgctgttctatcatatgtgg |
33769423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 107 - 223
Target Start/End: Original strand, 33764468 - 33764584
Alignment:
| Q |
107 |
aatggaacatacgtgggatctttgtcacacatattccagattccaagagacctttcacaccaacttttgattcttcaaaggctttcacttcagctaccct |
206 |
Q |
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| T |
33764468 |
aatggaacatacgtgggatctttgtcacgcatgttccagattctacgaggccttttacaccagcttttgattcgtcaaaagctttcacttcagctattct |
33764567 |
T |
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| Q |
207 |
gtcatatgtggaagtgg |
223 |
Q |
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| T |
33764568 |
gttatatgtggaagtgg |
33764584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 26395890 - 26395846
Alignment:
| Q |
154 |
agacctttcacaccaacttttgattcttcaaaggctttcacttca |
198 |
Q |
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| T |
26395890 |
agacctcttacaccaacttttgattcttcaaaagctttcacttca |
26395846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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