View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14163_low_14 (Length: 336)

Name: NF14163_low_14
Description: NF14163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14163_low_14
NF14163_low_14
[»] scaffold0003 (4 HSPs)
scaffold0003 (94-269)||(35826-36001)
scaffold0003 (207-269)||(42497-42559)
scaffold0003 (291-336)||(42430-42475)
scaffold0003 (291-336)||(35759-35804)
[»] chr2 (2 HSPs)
chr2 (94-232)||(32279947-32280085)
chr2 (179-256)||(7828585-7828661)
[»] chr3 (8 HSPs)
chr3 (207-269)||(31688537-31688599)
chr3 (207-269)||(31911977-31912039)
chr3 (207-269)||(31945625-31945687)
chr3 (94-176)||(53559006-53559089)
chr3 (291-336)||(31688621-31688666)
chr3 (291-336)||(31911910-31911955)
chr3 (291-336)||(31945558-31945603)
chr3 (94-149)||(12537847-12537902)
[»] chr6 (3 HSPs)
chr6 (207-269)||(27444802-27444861)
chr6 (291-336)||(27444883-27444928)
chr6 (129-213)||(11382815-11382899)
[»] chr7 (1 HSPs)
chr7 (195-256)||(18940204-18940264)


Alignment Details
Target: scaffold0003 (Bit Score: 144; Significance: 1e-75; HSPs: 4)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 94 - 269
Target Start/End: Complemental strand, 36001 - 35826
Alignment:
Q  94 tcttctattaggtcttaatttttcttacttaatgtttctatcaaattggattctaaatctgagtttttctttgacaagaaatgctactatttgttgaaga 193  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||    
T  36001 tcttctattaggtcataatttttcttactcaatgtttctatcaaattggattctaaatctgggtttttctttggcaagaaatgctactatttggtgaaga 35902  T
Q  194 gtcaaaatatagcaattgggttttcaaggtactggagttttgaaccaatcaatttgctcgattcatcatttgttaa 269  Q
     ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  35901 atcaaaatatagcaattgggttttcaaggtactatagttttgaaccaatcaatttgctcgattcatcatttgttaa 35826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 207 - 269
Target Start/End: Complemental strand, 42559 - 42497
Alignment:
Q  207 aattgggttttcaaggtactggagttttgaaccaatcaatttgctcgattcatcatttgttaa 269  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42559 aattgagttttcaaggtactgtagttttgaaccaatcaatttgctcgattcatcatttgttaa 42497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 42475 - 42430
Alignment:
Q  291 agctttagttcaaaatagttgaagaacttaacgggcttatgagttt 336  Q
    ||||||||||||||||||||||||||||||||||| || |||||||    
T  42475 agctttagttcaaaatagttgaagaacttaacggggttgtgagttt 42430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 35804 - 35759
Alignment:
Q  291 agctttagttcaaaatagttgaagaacttaacgggcttatgagttt 336  Q
    |||||||||||||||||||||||||| |||||||| || |||||||    
T  35804 agctttagttcaaaatagttgaagaatttaacggggttgtgagttt 35759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 94 - 232
Target Start/End: Original strand, 32279947 - 32280085
Alignment:
Q  94 tcttctattaggtcttaatttttcttacttaatgtttctatcaaattggattctaaatctgagtttttctttgacaagaaatgctactatttgttgaaga 193  Q
    |||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||| ||||||    
T  32279947 tcttctattaggtcataatttttcttactcaatggttctatcaaattggattctaaatctgagcttttctttggcaagaaatgctactacttggtgaaga 32280046  T
Q  194 gtcaaaatatagcaattgggttttcaaggtactggagtt 232  Q
     |||||||||||||||||||||||||||||| |||||||    
T  32280047 atcaaaatatagcaattgggttttcaaggtagtggagtt 32280085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 256
Target Start/End: Complemental strand, 7828661 - 7828585
Alignment:
Q  179 actatttgttgaagagtcaaaatatagcaattgggttttcaaggtactggagttttgaaccaatcaatttgctcgatt 256  Q
    |||||||| || ||| |||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  7828661 actatttggtgtagaatcaaaatagagcaattgggttttcaag-tactgcagttttgaaccaatcaatttgctcgatt 7828585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 207 - 269
Target Start/End: Original strand, 31688537 - 31688599
Alignment:
Q  207 aattgggttttcaaggtactggagttttgaaccaatcaatttgctcgattcatcatttgttaa 269  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31688537 aattgggttttcaaggtactgtagttttgaaccaatcaatttgctcgattcatcatttgttaa 31688599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 207 - 269
Target Start/End: Complemental strand, 31912039 - 31911977
Alignment:
Q  207 aattgggttttcaaggtactggagttttgaaccaatcaatttgctcgattcatcatttgttaa 269  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31912039 aattgagttttcaaggtactgtagttttgaaccaatcaatttgctcgattcatcatttgttaa 31911977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 207 - 269
Target Start/End: Complemental strand, 31945687 - 31945625
Alignment:
Q  207 aattgggttttcaaggtactggagttttgaaccaatcaatttgctcgattcatcatttgttaa 269  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31945687 aattgagttttcaaggtactgtagttttgaaccaatcaatttgctcgattcatcatttgttaa 31945625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 94 - 176
Target Start/End: Complemental strand, 53559089 - 53559006
Alignment:
Q  94 tcttctattaggtcttaattttt-cttacttaatgtttctatcaaattggattctaaatctgagtttttctttgacaagaaatg 176  Q
    |||||||||||||| || ||||| |||||| |||| ||||||||||||||||| |||||||||| |||||||||  ||||||||    
T  53559089 tcttctattaggtcgtagttttttcttactcaatggttctatcaaattggattataaatctgagattttctttggtaagaaatg 53559006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 31688621 - 31688666
Alignment:
Q  291 agctttagttcaaaatagttgaagaacttaacgggcttatgagttt 336  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||    
T  31688621 agctttagttcaaaatagttgaagaacttaatggggttgtgagttt 31688666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 31911955 - 31911910
Alignment:
Q  291 agctttagttcaaaatagttgaagaacttaacgggcttatgagttt 336  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||    
T  31911955 agctttagttcaaaatagttgaagaacttaatggggttgtgagttt 31911910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 31945603 - 31945558
Alignment:
Q  291 agctttagttcaaaatagttgaagaacttaacgggcttatgagttt 336  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||    
T  31945603 agctttagttcaaaatagttgaagaacttaatggggttgtgagttt 31945558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 12537902 - 12537847
Alignment:
Q  94 tcttctattaggtcttaatttttcttacttaatgtttctatcaaattggattctaa 149  Q
    ||||||||||||||  ||||| |||||||| ||| |||||||||| ||||||||||    
T  12537902 tcttctattaggtcagaatttatcttacttgatggttctatcaaaatggattctaa 12537847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 207 - 269
Target Start/End: Original strand, 27444802 - 27444861
Alignment:
Q  207 aattgggttttcaaggtactggagttttgaaccaatcaatttgctcgattcatcatttgttaa 269  Q
    |||||||||||||||||   | |||||||||||||||||||||||||||||||||||||||||    
T  27444802 aattgggttttcaaggt---gtagttttgaaccaatcaatttgctcgattcatcatttgttaa 27444861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 27444883 - 27444928
Alignment:
Q  291 agctttagttcaaaatagttgaagaacttaacgggcttatgagttt 336  Q
    ||||| ||||||||||||||||||||||||||||| || |||||||    
T  27444883 agcttcagttcaaaatagttgaagaacttaacggggttgtgagttt 27444928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 213
Target Start/End: Original strand, 11382815 - 11382899
Alignment:
Q  129 ttctatcaaattggattctaaatctgagtttttctttgacaagaaatgctactatttgttgaagagtcaaaatatagcaattggg 213  Q
    ||||||||||||| ||||||||| |||| ||||| ||| || |||  || |||||||| || ||| |||||||| ||||||||||    
T  11382815 ttctatcaaattgaattctaaatttgagattttcattggcaggaatggcaactatttggtgtagaatcaaaatagagcaattggg 11382899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 195 - 256
Target Start/End: Complemental strand, 18940264 - 18940204
Alignment:
Q  195 tcaaaatatagcaattgggttttcaaggtactggagttttgaaccaatcaatttgctcgatt 256  Q
    |||||||| |||||||||||||||||| | ||| ||||||||||||||||||||||||||||    
T  18940264 tcaaaatagagcaattgggttttcaag-tgctgtagttttgaaccaatcaatttgctcgatt 18940204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University