View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14163_low_15 (Length: 329)
Name: NF14163_low_15
Description: NF14163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14163_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 27 - 324
Target Start/End: Complemental strand, 43550846 - 43550549
Alignment:
| Q |
27 |
cttctcttcctctgcagatacttccatcagaatcaaactcagacaaattttgaaccaccgaatgaagtccacttcgagcagcgataggtttgttaagaac |
126 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43550846 |
cttctcttcctctgcagttgcttccatcagaatcaacctcagacaaattttgaaccaccgaatgaagtccacttcgagcagcgataggtttgttaagaac |
43550747 |
T |
|
| Q |
127 |
agtatccaaagacataaacaacacaagtggtttggtcacattagcccttataaactcctcacgagcaagaggctcttgatcagccatagcagataccaaa |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43550746 |
agtatccaaagacataaacaacacaagtggtttggtcacattagcccttataaactcctcacgagcaagaggctcttgatcagccatagcagataccaaa |
43550647 |
T |
|
| Q |
227 |
ttagcaaccgaaacacggactctgaatactgcatccgatagaacctgaacaataacaggaaccgcgaggttgctgagaaggaattgaacgaacctttg |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43550646 |
ttagcaaccgaaacacggactctgaatactgcatccgatagaacctgaacaataacaggaaccgcgaggttgctgagaaggaattgaacgaacctttg |
43550549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University