View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14163_low_17 (Length: 314)

Name: NF14163_low_17
Description: NF14163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14163_low_17
NF14163_low_17
[»] chr6 (1 HSPs)
chr6 (1-297)||(29420436-29420732)


Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 29420436 - 29420732
Alignment:
Q  1 ttattacatttttcttttagatttactttatataaaattaagatgctttcattataaataatgtcatatccttgtcgtgatatattttgtttatattgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29420436 ttattacatttttcttttagatttactttatataaaattaagatgctttcattataaataatgtcatatccttgtcgtgatatattttgtttatattgat 29420535  T
Q  101 aagaaaatttagtctgtcataccttatcacgtttaattggactttattataaatgaatatttaatacatatttttataatctttgcattccaattattga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29420536 aagaaaatttagtctgtcataccttatcacgtttaattggactttattataaatgaatatttaatacatatttttataatctttgcattccaattattga 29420635  T
Q  201 tcttaattatattcctcaactttggctttaatcacacatgagttccactatataatggcccaagctacacaatttggctgaaaggaacaaatatata 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29420636 tcttaattatattcctcaactttggctttaatcacacatgagttccactatataatggcccaagctacacaatttggctgaaaggaacaaatatata 29420732  T

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