View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14163_low_2 (Length: 710)
Name: NF14163_low_2
Description: NF14163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14163_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 12 - 500
Target Start/End: Original strand, 29727023 - 29727513
Alignment:
| Q |
12 |
gaagaatatcgagaatgagtttgtatctgagtgatcccccgatgaacatggttagtagtagtagctgtctttagtagtagtggcatgggaagtgttaagg |
111 |
Q |
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| T |
29727023 |
gaagaatatcgagaatgagtttgtatctgagtgatcccccgatgaacatggttagtagtaatagctgtctttagtagtagtggcatgggaagtgttaagg |
29727122 |
T |
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| Q |
112 |
aaaacatgttagtgataatgtgaatatggttagtgataacgatttggctaatgtgggaaatggaaggtggttattgttattacgtagta--atgtagttt |
209 |
Q |
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| T |
29727123 |
aaaacatgttagtaataatgtgaatatggttagggataacgatttggctaatgtgggaaatggaaggtggttattgtttttacgtagtataatgtagttt |
29727222 |
T |
|
| Q |
210 |
agtaggatgtcttatttataattaaaaaatgtgttgttgaaacttgattggttgtgctgtaccgtagaaattacaaaagggaatgaatggctctaattag |
309 |
Q |
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| T |
29727223 |
agtaggatgtcttatttataattaaaaaatgtgttgttgaaacttgattggttgtgctgtaccgtagaaattacaaaagggaatgaatggctctaattag |
29727322 |
T |
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| Q |
310 |
gtgatagatacatattttgtctttctccttgcaaaccatcacatcaaaaatcttttgttctttgccttgtagcatgttgaagtactatgcaacctataga |
409 |
Q |
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| T |
29727323 |
gtgatggatgcatattttgtctttctccttgcaaaccatcacatcaaaaatctttcgttctttgccttgtagcatgttgaagtaatatgcaacctataga |
29727422 |
T |
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| Q |
410 |
tgccagaaaattagaagacttgtggttcaacacggctggctgtgggcatgtgcaagcagacccacagcataattcccttaattaactttgc |
500 |
Q |
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| T |
29727423 |
tgccagaaaattagaagacttgtggttcaacacggctggctgtgggcatgtgcaagcagacccacagcataattcccttaattaactttgc |
29727513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 502 - 692
Target Start/End: Complemental strand, 24683428 - 24683238
Alignment:
| Q |
502 |
atacaaagaggggataagaagggatagcgcttcgatcagcatgaaataaggtaagacccgaagcgtatagtcgaaactccttgagttaagcataaataag |
601 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24683428 |
atacaaagaggggataagaagggatagcgcttcgatcagcatgaaataaggtaagacccgaagcgtatagtagaaactccttgagttaagcataaataag |
24683329 |
T |
|
| Q |
602 |
taccccagaggctacgagaaagatctgagggcgatctcgcattgctgcctcacaaagcccttcctgctttctatacgcaatacttcgtcta |
692 |
Q |
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| T |
24683328 |
taccccagaggctacgagaaagatctgagggcgatctcgcattgctgcctcacaaagcccttcctgctttctatacgcaatacttcgtcta |
24683238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 622 - 663
Target Start/End: Complemental strand, 9926224 - 9926183
Alignment:
| Q |
622 |
agatctgagggcgatctcgcattgctgcctcacaaagccctt |
663 |
Q |
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| T |
9926224 |
agatctgagggcgatctcgcattgctgcctcacaaagccctt |
9926183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 156; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 502 - 676
Target Start/End: Original strand, 16060468 - 16060640
Alignment:
| Q |
502 |
atacaaagaggggataagaagggatagcgcttcgatcagcatgaaataaggtaagacccgaagcgtatagtcgaaactccttgagttaagcataaataag |
601 |
Q |
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| T |
16060468 |
atacaaagaggggataagaagggatagcgcttcgatcagcatgaaataaggtaagacccgaagcgtatagtagaaactccttgagttaagcataaataag |
16060567 |
T |
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| Q |
602 |
taccccagaggctacgagaaagatctgagggcgatctcgcattgctgcctcacaaagcccttcctgctttctata |
676 |
Q |
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| T |
16060568 |
taccccagaggctacaagaaagatctgagggcgatctcgcattgctgcctcacaaagccc--cctgctttctata |
16060640 |
T |
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