View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14163_low_20 (Length: 252)
Name: NF14163_low_20
Description: NF14163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14163_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 44935373 - 44935598
Alignment:
| Q |
11 |
gatggtgatggttgaggaggcggtggagaccttaacttgcttcttcttgaggttaaattggatgaacgggaagaaatgttgttagcaacagttaagttgc |
110 |
Q |
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| T |
44935373 |
gatggtgatggttgaggaggcggtgaagaccttaacttgcttcttcttgaggttaaattggatgaacgggaagaaatgttgttagcaactgttaagttgc |
44935472 |
T |
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| Q |
111 |
aattagagagtgagcatgcaacccaacaacattagataaaataacaacaatgactaatttagtttcaagacaaaatttaaaaggataaaacatacgtcat |
210 |
Q |
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| T |
44935473 |
aattagagagtgagcatgcaacccaacaacattagataaaataacaacaatgactaatttagtttcaagacaaaatttaaaaggataaaacatacatcat |
44935572 |
T |
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| Q |
211 |
tacttttgatcaagtaaggatttcat |
236 |
Q |
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| T |
44935573 |
tacttttgatcaagtaaggatttcat |
44935598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 44925785 - 44925833
Alignment:
| Q |
121 |
tgagcatgcaa-cccaacaacattagataaaataacaacaatgactaat |
168 |
Q |
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| T |
44925785 |
tgagcatgcaaacccaacaacattagataaaagaacaacaatgactaat |
44925833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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