View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14163_low_24 (Length: 224)

Name: NF14163_low_24
Description: NF14163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14163_low_24
NF14163_low_24
[»] scaffold0177 (8 HSPs)
scaffold0177 (1-206)||(21687-21891)
scaffold0177 (1-206)||(21855-22060)
scaffold0177 (1-144)||(22024-22167)
scaffold0177 (44-206)||(22811-22972)
scaffold0177 (112-206)||(21442-21536)
scaffold0177 (2-53)||(21501-21552)
scaffold0177 (1-77)||(22936-23012)
scaffold0177 (113-206)||(21630-21723)
[»] chr2 (4 HSPs)
chr2 (1-206)||(33866336-33866540)
chr2 (1-206)||(33866168-33866372)
chr2 (37-206)||(33866504-33866672)
chr2 (1-121)||(33866084-33866204)
[»] chr7 (5 HSPs)
chr7 (1-126)||(40589724-40589849)
chr7 (85-206)||(40589639-40589760)
chr7 (47-116)||(43181223-43181292)
chr7 (47-116)||(43181292-43181361)
chr7 (56-116)||(43181361-43181421)
[»] chr6 (4 HSPs)
chr6 (8-126)||(27901611-27901729)
chr6 (85-206)||(19284438-19284559)
chr6 (1-62)||(19284523-19284584)
chr6 (96-206)||(27901531-27901640)
[»] scaffold1425 (3 HSPs)
scaffold1425 (4-116)||(1720-1832)
scaffold1425 (1-71)||(1-71)
scaffold1425 (107-202)||(39-134)
[»] scaffold0320 (2 HSPs)
scaffold0320 (55-206)||(35-199)
scaffold0320 (1-71)||(1-71)
[»] chr8 (5 HSPs)
chr8 (21-132)||(24632608-24632720)
chr8 (40-104)||(24632115-24632179)
chr8 (7-73)||(22651373-22651439)
chr8 (21-89)||(24632276-24632345)
chr8 (20-179)||(24631911-24632075)
[»] chr3 (2 HSPs)
chr3 (1-73)||(2941126-2941198)
chr3 (86-206)||(2941043-2941162)
[»] scaffold0585 (1 HSPs)
scaffold0585 (89-180)||(1590-1681)
[»] chr1 (2 HSPs)
chr1 (40-105)||(33036756-33036821)
chr1 (40-105)||(33036848-33036913)
[»] scaffold0036 (3 HSPs)
scaffold0036 (119-178)||(93246-93305)
scaffold0036 (119-178)||(93305-93364)
scaffold0036 (134-178)||(93364-93408)
[»] chr4 (3 HSPs)
chr4 (77-124)||(15983840-15983887)
chr4 (77-124)||(15983907-15983954)
chr4 (77-124)||(15983974-15984021)


Alignment Details
Target: scaffold0177 (Bit Score: 138; Significance: 3e-72; HSPs: 8)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 21687 - 21891
Alignment:
Q  1 ggtcaccaaaggttcctcctttggagacgaacttaatttaaactttattttagggaagtaacttgttaattaggtccataatcatcataaaattagtatt 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21687 ggtcaccaaaggttcctccttgggagacgaacttaatttaaactttattttagggaagtaacttcttaattaggtccataatcatcataaaattagtatt 21786  T
Q  101 acatatctagaatgaactatattaggaattttgcaagaatccaaaccaaaaaagatcggattaaatttttgtcaccaaaggttcgaactttggagacgaa 200  Q
    ||| | |||||||||||||||||||| |||| |||||||||||| ||||| ||| | ||| |||||||| ||||||||||||||   |||| ||||||||    
T  21787 acaaaactagaatgaactatattaggcatttggcaagaatccaagccaaagaaggtagga-taaattttggtcaccaaaggttcctcctttcgagacgaa 21885  T
Q  201 cttaat 206  Q
    ||||||    
T  21886 cttaat 21891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 21855 - 22060
Alignment:
Q  1 ggtcaccaaaggttcctcctttggagacgaacttaatttaaactttattttagggaagtaacttgttaattaggtccataatcatcataaaattagtatt 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||    
T  21855 ggtcaccaaaggttcctcctttcgagacgaacttaatttaaactttattttagggaagtaacttcttaatttggtccataatcatcataaaagtagtatt 21954  T
Q  101 acatatctagaatgaactatattaggaattttgcaagaatccaaaccaaaaaagatcggattaaatttttgtcaccaaaggttcgaactttggagacgaa 200  Q
    ||||  |||||||||| ||||||||| |||| |||||||| ||| ||| ||||| ||  |||||||||| ||||||||||||||   ||| |||||| ||    
T  21955 acattactagaatgaattatattaggcatttggcaagaattcaagccataaaagttcatattaaattttggtcaccaaaggttcctccttgggagacaaa 22054  T
Q  201 cttaat 206  Q
    ||||||    
T  22055 cttaat 22060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 22024 - 22167
Alignment:
Q  1 ggtcaccaaaggttcctcctttggagacgaacttaatttaaactttattttagggaagtaacttgttaattaggtccataatcatcataaaattagtatt 100  Q
    ||||||||||||||||||||| |||||| ||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  22024 ggtcaccaaaggttcctccttgggagacaaacttaatttaaattttattttaaggaagtaacttgttaattaggttcataatcatcataaaattagtatt 22123  T
Q  101 acatatctagaatgaactatattaggaattttgcaagaatccaa 144  Q
    ||||| |||||||||||||||||||| |||| ||||||||||||    
T  22124 acataactagaatgaactatattaggcatttggcaagaatccaa 22167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 44 - 206
Target Start/End: Original strand, 22811 - 22972
Alignment:
Q  44 tttattttagggaagtaacttgttaattaggtccataatcatcataaaattagtattacatatctagaatgaactatattaggaattttgcaagaatcca 143  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||  ||||||||||    
T  22811 tttattttagggaagtaacttgttaattatgtccataatcatcataaaattagtattacataactagaatgaactatattaggcatttgacaagaatcca 22910  T
Q  144 aaccaaaaaagatcggattaaatttttgtcaccaaaggttcgaactttggagacgaacttaat 206  Q
    | ||||||||| | ||| |||||||| ||||||||||||||   ||| |||||||||||||||    
T  22911 agccaaaaaaggtagga-taaattttggtcaccaaaggttccttcttgggagacgaacttaat 22972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 21442 - 21536
Alignment:
Q  112 atgaactatattaggaattttgcaagaatccaaaccaaaaaagatcggattaaatttttgtcaccaaaggttcgaactttggagacgaacttaat 206  Q
    ||||||||||||||| |||| |||||||||||| | ||||||| |||||||||||||||||||||||||||||   |||||||||||||||||||    
T  21442 atgaactatattaggtatttggcaagaatccaagcaaaaaaagttcggattaaatttttgtcaccaaaggttcctcctttggagacgaacttaat 21536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 21501 - 21552
Alignment:
Q  2 gtcaccaaaggttcctcctttggagacgaacttaatttaaactttattttag 53  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21501 gtcaccaaaggttcctcctttggagacgaacttaatttaaactttattttag 21552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 22936 - 23012
Alignment:
Q  1 ggtcaccaaaggttcctcctttggagacgaacttaatttaaactttattttagggaagtaacttgttaattaggtcc 77  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||| ||||| || || ||| |||||||||||||||    
T  22936 ggtcaccaaaggttccttcttgggagacgaacttaatttaaacttaattttcggaaattaagttgttaattaggtcc 23012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 21630 - 21723
Alignment:
Q  113 tgaactatattaggaattttgcaagaatccaaaccaaaaaagatcggattaaatttttgtcaccaaaggttcgaactttggagacgaacttaat 206  Q
    |||||||||||||| |||| |||||||| ||| ||| | ||| |||||||||||||| ||||||||||||||   ||| |||||||||||||||    
T  21630 tgaactatattaggcatttggcaagaattcaagccatacaagttcggattaaattttggtcaccaaaggttcctccttgggagacgaacttaat 21723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 33866540 - 33866336
Alignment:
Q  1 ggtcaccaaaggttcctcctttggagacgaacttaatttaaactttattttagggaagtaacttgttaattaggtccataatcatcataaaattagtatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||| ||||||    
T  33866540 ggtcaccaaaggttcctcctttggagacgaacttaatttaaactttattttaggaaagaaacttgttaattaggtccataatcatcatacaatgagtatt 33866441  T
Q  101 acatatctagaatgaactatattaggaattttgcaagaatccaaaccaaaaaagatcggattaaatttttgtcaccaaaggttcgaactttggagacgaa 200  Q
    |||||  ||||||||||||||  ||  |||| |||||||||||| || |||||| | |||| ||||||| ||||||| | ||||   |||||||||||||    
T  33866440 acataaatagaatgaactatagcagacatttagcaagaatccaagcc-aaaaaggtaggataaaattttggtcaccagaagttcctcctttggagacgaa 33866342  T
Q  201 cttaat 206  Q
    ||||||    
T  33866341 cttaat 33866336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 33866372 - 33866168
Alignment:
Q  1 ggtcaccaaaggttcctcctttggagacgaacttaatttaaactttattttagggaagtaacttgttaattaggtccataatcatcataaaattagtatt 100  Q
    |||||||| | |||||||||||||||||||||||||||||||  |||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||    
T  33866372 ggtcaccagaagttcctcctttggagacgaacttaatttaaaaattattttagggaagaaacttgttatttaggtccataatcatcatagaattagtatt 33866273  T
Q  101 acatatctagaatgaactatattaggaattttgcaagaatccaaaccaaaaaagatcggattaaatttttgtcaccaaaggttcgaactttggagacgaa 200  Q
    |||||  ||||||||||||||  | | |||| |||||||| |||| | |||||| | |||| ||||||| ||||||||||||||   |||||||||||||    
T  33866272 acataaatagaatgaactatagcaagcatttggcaagaat-caaagccaaaaagttaggataaaattttggtcaccaaaggttcctcctttggagacgaa 33866174  T
Q  201 cttaat 206  Q
    ||||||    
T  33866173 cttaat 33866168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 37 - 206
Target Start/End: Complemental strand, 33866672 - 33866504
Alignment:
Q  37 tttaaactttattttagggaagtaacttgttaattaggtccataatcatcataaaattagtattacatatctagaatgaactatattaggaattttgcaa 136  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||  ||||||||||||||  ||  |||| | ||    
T  33866672 tttaaactttattttagggaagaaacttgttaattaggtccataatcatcatacaatgagtattacataaatagaatgaactatagcagacatttggaaa 33866573  T
Q  137 gaatccaaaccaaaaaagatcggattaaatttttgtcaccaaaggttcgaactttggagacgaacttaat 206  Q
    ||||| || || |||||| | |||| ||||||| ||||||||||||||   |||||||||||||||||||    
T  33866572 gaatcgaagcc-aaaaaggtaggataaaattttggtcaccaaaggttcctcctttggagacgaacttaat 33866504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 33866204 - 33866084
Alignment:
Q  1 ggtcaccaaaggttcctcctttggagacgaacttaatttaaactttattttagggaagtaacttgttaattaggtccataatcatcataaaattagtatt 100  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||| |||  |||||||||||| ||||||||||||||| | ||| ||||||    
T  33866204 ggtcaccaaaggttcctcctttggagacgaacttaatttgtactttattttagagaaaaaacttgttaattgggtccataatcatcaaacaatgagtatt 33866105  T
Q  101 acatatctagaatgaactata 121  Q
    |||||  ||||||||||||||    
T  33866104 acataaatagaatgaactata 33866084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 40589724 - 40589849
Alignment:
Q  1 ggtcaccaaaggttcctcctttggagacgaacttaatttaaactttattttagggaagtaacttgttaattaggtccataatcatcataaaattagtatt 100  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40589724 ggtcaccaaaggttcctcatttggagacgtacttaatttaaactttatattagggaagtaacttgttaattaggtccataatcatcataaaattagtatt 40589823  T
Q  101 acatatctagaatgaactatattagg 126  Q
    ||||| ||||||||||||||||||||    
T  40589824 acataactagaatgaactatattagg 40589849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 85 - 206
Target Start/End: Original strand, 40589639 - 40589760
Alignment:
Q  85 tcataaaattagtattacatatctagaatgaactatattaggaattttgcaagaatccaaaccaaaaaagatcggattaaatttttgtcaccaaaggttc 184  Q
    ||||||||||||||||||||| ||| |||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  40589639 tcataaaattagtattacataactaaaatgaactatattaggcatttggcaagaatccaaaccaaaaaagttcggattaaattttggtcaccaaaggttc 40589738  T
Q  185 gaactttggagacgaacttaat 206  Q
        |||||||||| |||||||    
T  40589739 ctcatttggagacgtacttaat 40589760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 43181292 - 43181223
Alignment:
Q  47 attttagggaagtaacttgttaattaggtccataatcatcataaaattagtattacatatctagaatgaa 116  Q
    |||||||||||||||||| |||||| |||| |||||||||||||||||||||||| ||| ||||||||||    
T  43181292 attttagggaagtaacttattaatttggtctataatcatcataaaattagtattatataactagaatgaa 43181223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 43181361 - 43181292
Alignment:
Q  47 attttagggaagtaacttgttaattaggtccataatcatcataaaattagtattacatatctagaatgaa 116  Q
    |||||||||||||||||| |||||| |||| |||||||||||||||||||||||| ||| ||||||||||    
T  43181361 attttagggaagtaacttattaatttggtctataatcatcataaaattagtattatataactagaatgaa 43181292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 43181421 - 43181361
Alignment:
Q  56 aagtaacttgttaattaggtccataatcatcataaaattagtattacatatctagaatgaa 116  Q
    ||||||||| |||||| |||| |||||||||||||||||||||||| ||| ||||||||||    
T  43181421 aagtaacttattaatttggtctataatcatcataaaattagtattatataactagaatgaa 43181361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 8e-54; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 27901611 - 27901729
Alignment:
Q  8 aaaggttcctcctttggagacgaacttaatttaaactttattttagggaagtaacttgttaattaggtccataatcatcataaaattagtattacatatc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  27901611 aaaggttcctcctttggagacgaacttaatttaaactttattttagggatgtaacttgttaattaggtccataatcatcataaaattagtattaaataac 27901710  T
Q  108 tagaatgaactatattagg 126  Q
    |||||||||||||||||||    
T  27901711 tagaatgaactatattagg 27901729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 85 - 206
Target Start/End: Original strand, 19284438 - 19284559
Alignment:
Q  85 tcataaaattagtattacatatctagaatgaactatattaggaattttgcaagaatccaaaccaaaaaagatcggattaaatttttgtcaccaaaggttc 184  Q
    |||||||| |||||||||||| ||||||||||||||| | ||||||| ||||||||||||||||||||| |||||||||||| || ||||||||||||||    
T  19284438 tcataaaaatagtattacataactagaatgaactataatcggaatttggcaagaatccaaaccaaaaaatatcggattaaatgttggtcaccaaaggttc 19284537  T
Q  185 gaactttggagacgaacttaat 206  Q
       |||||||||||||||||||    
T  19284538 ctcctttggagacgaacttaat 19284559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 19284523 - 19284584
Alignment:
Q  1 ggtcaccaaaggttcctcctttggagacgaacttaatttaaactttattttagggaagtaac 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19284523 ggtcaccaaaggttcctcctttggagacgaacttaatttaaactttattttagggaagtaac 19284584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 96 - 206
Target Start/End: Original strand, 27901531 - 27901640
Alignment:
Q  96 gtattacatatctagaatgaactatattaggaattttgcaagaatccaaaccaaaaaagatcggattaaatttttgtcaccaaaggttcgaactttggag 195  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||| | ||| |||||||| || || ||||||||   ||||||||    
T  27901531 gtattacataactagaatgaactatattaggaatttggcaagaatccaagccaaaaaaggtagga-taaattttggttacgaaaggttcctcctttggag 27901629  T
Q  196 acgaacttaat 206  Q
    |||||||||||    
T  27901630 acgaacttaat 27901640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: scaffold1425
Description:

Target: scaffold1425; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 1832 - 1720
Alignment:
Q  4 caccaaaggttcctcctttggagacgaacttaatttaaactttattttagggaagtaacttgttaattaggtccataatcatcataaaattagtattaca 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||| |    
T  1832 caccaaaggttcctcctttggagacgaacttaatttaaactttattttagggaagtaactggttaattaggtcgataatcatcataacattagtattaaa 1733  T
Q  104 tatctagaatgaa 116  Q
    || ||||||||||    
T  1732 taactagaatgaa 1720  T

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Target: scaffold1425; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 71 - 1
Alignment:
Q  1 ggtcaccaaaggttcctcctttggagacgaacttaatttaaactttattttagggaagtaacttgttaatt 71  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  71 ggtcaccaaaggttcctcctatggagacgaactcaatttaaactttattttagggaagtaacttgttaatt 1  T

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Target: scaffold1425; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 107 - 202
Target Start/End: Complemental strand, 134 - 39
Alignment:
Q  107 ctagaatgaactatattaggaattttgcaagaatccaaaccaaaaaagatcggattaaatttttgtcaccaaaggttcgaactttggagacgaact 202  Q
    |||||||||||||||||||| |||  |||||||||||||||||||||| |||||||||||||| ||||||||||||||   || ||||||||||||    
T  134 ctagaatgaactatattaggcattaggcaagaatccaaaccaaaaaagttcggattaaattttggtcaccaaaggttcctcctatggagacgaact 39  T

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Target: scaffold0320 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 55 - 206
Target Start/End: Complemental strand, 199 - 35
Alignment:
Q  55 gaagtaacttgttaattaggtccataatcatcataaaattagtattacatatctagaatgaactatattaggaatttt-------------gcaagaatc 141  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||              |||||||||    
T  199 gaagtaacttgttaaataggtccataatcatcataaaattagtattacataactagaatgatctatattaggcatttatattaggcatttggcaagaatc 100  T
Q  142 caaaccaaaaaagatcggattaaatttttgtcaccaaaggttcgaactttggagacgaacttaat 206  Q
    ||||||||||||| |||||||||||||| ||||||||||||||   |||||||||||||||||||    
T  99 caaaccaaaaaagttcggattaaattttggtcaccaaaggttccttctttggagacgaacttaat 35  T

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Target: scaffold0320; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 71 - 1
Alignment:
Q  1 ggtcaccaaaggttcctcctttggagacgaacttaatttaaactttattttagggaagtaacttgttaatt 71  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  71 ggtcaccaaaggttccttctttggagacgaacttaatttaaaccttattttagggaagtaacttgttaatt 1  T

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Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 24632608 - 24632720
Alignment:
Q  21 ttggagacgaacttaatttaaa-ctttattttagggaagtaacttgttaattaggtccataatcatcataaaattagtattacatatctagaatgaacta 119  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||   || |||||||||    
T  24632608 ttggagacgaactcaatttaaaactttattttagggaagtaacttgttaattaggtccataatcatcataaaatgagtattacatcaatataatgaacta 24632707  T
Q  120 tattaggaatttt 132  Q
    || |||| |||||    
T  24632708 tagtaggcatttt 24632720  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 24632115 - 24632179
Alignment:
Q  40 aaactttattttagggaagtaacttgttaattaggtccataatcatcataaaattagtattacat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24632115 aaactttattttagggaagtaacttgttaattaggtccataatcatcataaaataagtattacat 24632179  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 22651373 - 22651439
Alignment:
Q  7 caaaggttcctcctttggagacgaacttaatttaaactttattttagggaagtaacttgttaattag 73  Q
    ||||| ||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  22651373 caaagattcctcctttgcagacgaacttagtttaaactttattttaggaaagtaacttgttaattag 22651439  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 24632276 - 24632345
Alignment:
Q  21 ttggagacgaacttaatttaa-actttattttagggaagtaacttgttaattaggtccataatcatcata 89  Q
    ||||||||||||| ||||||  |||| |||||||||||||||| ||||||||| ||||||||| ||||||    
T  24632276 ttggagacgaactcaatttagtacttaattttagggaagtaacatgttaattaagtccataatgatcata 24632345  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 24631911 - 24632075
Alignment:
Q  20 tttggagacgaacttaatttaaa-ctttattttagggaagtaacttgttaattaggtccataa----tcatcataaaattagtattacatatctagaatg 114  Q
    |||||||| ||||| |||||||| |||||||| ||||||||||||| ||||||| ||||| ||    |||| ||||||  | ||||||||   |||||||    
T  24631911 tttggagaagaactcaatttaaaactttatttaagggaagtaacttcttaattatgtccagaatcattcattataaaacgattattacatcagtagaatg 24632010  T
Q  115 aactatattaggaattttgcaagaatccaaaccaaaaaagatcggattaaatttttgtcaccaaa 179  Q
    ||||||| ||   ||||| |||| |||||| ||||||||| |  ||| ||||||| |||| ||||    
T  24632011 aactataataaacattttccaagtatccaagccaaaaaaggtaagataaaattttagtcaacaaa 24632075  T

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Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 2941126 - 2941198
Alignment:
Q  1 ggtcaccaaaggttcctcctttggagacgaacttaatttaaactttattttagggaagtaacttgttaattag 73  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  2941126 ggtcaccaaaggttcctccattggaaacgaacttaatttaaactttattttagggaagtaacttcttaattag 2941198  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 86 - 206
Target Start/End: Original strand, 2941043 - 2941162
Alignment:
Q  86 cataaaattagtattacatatctagaatgaactatattaggaattttgcaagaatccaaaccaaaaaagatcggattaaatttttgtcaccaaaggttcg 185  Q
    |||||||||||||||||||| | |||||||||||||||||| |||| | |||||||||| ||||||||| | ||| |||||||| ||||||||||||||     
T  2941043 cataaaattagtattacataaccagaatgaactatattaggcatttggtaagaatccaatccaaaaaaggtagga-taaattttggtcaccaaaggttcc 2941141  T
Q  186 aactttggagacgaacttaat 206  Q
      | ||||| |||||||||||    
T  2941142 tccattggaaacgaacttaat 2941162  T

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Target: scaffold0585 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0585
Description:

Target: scaffold0585; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 1590 - 1681
Alignment:
Q  89 aaaattagtattacatatctagaatgaactatattaggaattttgcaagaatccaaaccaaaaaagatcggattaaatttttgtcaccaaag 180  Q
    ||||||||||||| ||| |||||||||||||||||||| |||  ||||||||| |||||||||||| | |||||||||||| ||||||||||    
T  1590 aaaattagtattaaataactagaatgaactatattaggcattaggcaagaatctaaaccaaaaaagtttggattaaattttggtcaccaaag 1681  T

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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 33036821 - 33036756
Alignment:
Q  40 aaactttattttagggaagtaacttgttaattaggtccataatcatcataaaattagtattacata 105  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||    
T  33036821 aaactttattttagggaagtaacttgttaatttggtctataatcatcataaaataagtattacata 33036756  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 33036913 - 33036848
Alignment:
Q  40 aaactttattttagggaagtaacttgttaattaggtccataatcatcataaaattagtattacata 105  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||    
T  33036913 aaactttattttagggaagtaacttgttaatttggtctataatcatcataaaataagtattacata 33036848  T

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Target: scaffold0036 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 119 - 178
Target Start/End: Complemental strand, 93305 - 93246
Alignment:
Q  119 atattaggaattttgcaagaatccaaaccaaaaaagatcggattaaatttttgtcaccaa 178  Q
    |||||||||||||  ||||||||||||||||||||| | |||||||||||| ||||||||    
T  93305 atattaggaatttgacaagaatccaaaccaaaaaagtttggattaaattttggtcaccaa 93246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 119 - 178
Target Start/End: Complemental strand, 93364 - 93305
Alignment:
Q  119 atattaggaattttgcaagaatccaaaccaaaaaagatcggattaaatttttgtcaccaa 178  Q
    |||||||||||||  ||||||||||||||||||||| | |||||||||||| ||||||||    
T  93364 atattaggaatttgacaagaatccaaaccaaaaaagtttggattaaattttggtcaccaa 93305  T

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Target: scaffold0036; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 93408 - 93364
Alignment:
Q  134 caagaatccaaaccaaaaaagatcggattaaatttttgtcaccaa 178  Q
    ||||||||||||||||||||| | |||||||||||| ||||||||    
T  93408 caagaatccaaaccaaaaaagtttggattaaattttggtcaccaa 93364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 15983887 - 15983840
Alignment:
Q  77 cataatcatcataaaattagtattacatatctagaatgaactatatta 124  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  15983887 cataatcatcataaaattagtattacataactagaatgaacaatatta 15983840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 15983954 - 15983907
Alignment:
Q  77 cataatcatcataaaattagtattacatatctagaatgaactatatta 124  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  15983954 cataatcatcataaaattagtattacataactagaatgaacaatatta 15983907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 15984021 - 15983974
Alignment:
Q  77 cataatcatcataaaattagtattacatatctagaatgaactatatta 124  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  15984021 cataatcatcataaaattagtattacataactagaatgaacaatatta 15983974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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