View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14163_low_4 (Length: 583)
Name: NF14163_low_4
Description: NF14163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14163_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 43 - 567
Target Start/End: Original strand, 9086764 - 9087288
Alignment:
| Q |
43 |
gacaactaagcgtgaaactaatcttaaaccagcgtgattaataaatgagccacaaattggtcataggtcacatgaaatgtgtttgtttacaatttgatgg |
142 |
Q |
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| T |
9086764 |
gacaactaagcgtgaaactaatcttaaaccagcgtgattaataaatgagccacaaattggtcataggtcacatgaaatgtgtttgtttacaatttgatgg |
9086863 |
T |
|
| Q |
143 |
gtttattttccatcactcatttttcaatggttataagattgttctaattttaactttttcttttcagcttagttaataaaagatgtttctgatggctttc |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9086864 |
gtttattttccatcactcatttttcaatggttataagattgttctaattttaactttttcttttcagcttagttaataaaagatgtttctgatggctttc |
9086963 |
T |
|
| Q |
243 |
gttggctgcagttttctccacacgttgtattattatgaccatacaccttaattcactgcccatttacttttccacttttttgaatattatagtatctact |
342 |
Q |
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| T |
9086964 |
gttggctgcagttttctccacacgttgtattattatgaccatacaccttaatacactgcccatttacttttccacttttttgaatattatagtatctact |
9087063 |
T |
|
| Q |
343 |
agactgctagtgtatttaatttaacgaatgatttggtgtctacaaatgtagtattcaannnnnnnnatttcctgtatagtgtatgtgatgaaaatatctt |
442 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
9087064 |
agactgctagtgtatttaatttaacgaatgatttggtgtctacaaatgtagtattcaattttttttatttccagtatagtgtatgtgatgaaaatatctt |
9087163 |
T |
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| Q |
443 |
agttggttggttgtagtagactttgctaggaatgggctatgggacaacataaatttatatgcatgttgtatttattatattgtcatcactcttcccaatc |
542 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
9087164 |
agttggttggttgtagtagactttgctaggaatgggttatgggacaacataaatttatatgcatgttgtatttattatattgttatcactcttcccaatc |
9087263 |
T |
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| Q |
543 |
caatgtgtacaattggattagcatg |
567 |
Q |
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| T |
9087264 |
caatgtgtacaattggattagcatg |
9087288 |
T |
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