View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14163_low_5 (Length: 561)
Name: NF14163_low_5
Description: NF14163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14163_low_5 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 532; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 18 - 553
Target Start/End: Complemental strand, 2842052 - 2841517
Alignment:
| Q |
18 |
cctattcttcattgttatagcctttccttgttccaaaacatgttgtatgtaagaggtagtgatgagttcacgatgccttttatggaaagttagggttaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2842052 |
cctattcttcattgttatagcctttccttgttccaaaacatgttgtatgtaagaggtagtgatgagttcacgatgccttttatggaaagttagggttaag |
2841953 |
T |
|
| Q |
118 |
aatcttttctcatctgaactagggtatattgaaaatgattgtgttcttgaggtgatgtgatttgctgaccaccaaactttgacaccattgaactcatctg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2841952 |
aatcttttctcatctgaactagggtatattgaaaatgattgtgttcttgaggtgatgtgatttgctgaccaccaaactttgacaccattgaactcatctg |
2841853 |
T |
|
| Q |
218 |
tgatctcttggttgtcatccatgcttagaacaagtggattttggctatctttgataacttcagctttaagtcttctagctctttgtgaagagttagcact |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2841852 |
tgatctcttggttgtcatccatgcttagaacaagtggattttggctatctttgataacttcagctttaagtcttctagctctttgtgaagagttagcact |
2841753 |
T |
|
| Q |
318 |
aagatatgtttggatggttgtgtatgttttgttgtgtttgagattatctcctgatttctcatagaaggttattttgatgtaagggtacatgaagttggtg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2841752 |
aagatatgtttggatggttgtgtatgttttgttgtgtttgagattatctcctgatttctcatagaaggttattttgatgtaagggtacatgaagttggtg |
2841653 |
T |
|
| Q |
418 |
aatttgtgagtgtattttcgaagatatctacgaagtgctggtgggaagaatttctcatacatggcatatacaaacattatgctagccattattgagccta |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2841652 |
aatttgtgagtgtattttcgaagatatctacgaagtgctggtgggaagaatttctcatacatggcatatacaaacattatgctagccattattgagccta |
2841553 |
T |
|
| Q |
518 |
ggtttgaccatatttccctaattcccatctcctatg |
553 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2841552 |
ggtttgaccatatttccctaattcccatctcttatg |
2841517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 40 - 547
Target Start/End: Original strand, 2833590 - 2834097
Alignment:
| Q |
40 |
tttccttgttccaaaacatgttgtatgtaagaggtagtgatgagttcacgatgccttttatggaaagttagggttaagaatcttttctcatctgaactag |
139 |
Q |
| |
|
||||||| ||||| |||||||| ||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||| ||||||||| ||| |
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|
| T |
2833590 |
tttccttcatccaacacatgttgaatgtaagaggtagtgatgacttcacgatgctttttatggaaggttagggttaagaatcttttttcatctgaagtag |
2833689 |
T |
|
| Q |
140 |
ggtatattgaaaatgattgtgttcttgaggtgatgtgatttgctgaccaccaaactttgacaccattgaactcatctgtgatctcttggttgtcatccat |
239 |
Q |
| |
|
| || ||||||||||||| | |||||||| ||| ||| || | ||||||||||||||| ||||||||||||||| |||| |||| || |||||||| |
|
|
| T |
2833690 |
gatagtaagaaaatgattgtgattttgaggtggtgtaattagcagtccaccaaactttgactccattgaactcatctatgatttcttcattatcatccat |
2833789 |
T |
|
| Q |
240 |
gcttagaacaagtggattttggctatctttgataacttcagctttaagtcttctagctctttgtgaagagttagcactaagatatgtttggatggttgtg |
339 |
Q |
| |
|
|||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||| || || |
|
|
| T |
2833790 |
gcttaggacaagtgggttttggctatctttgacaacttcagctttaagtcttctagctctttgggatgagttatcactaagatatgtttggatgattttg |
2833889 |
T |
|
| Q |
340 |
tatgttttgttgtgtttgagattatctcctgatttctcatagaaggttattttgatgtaagggtacatgaagttggtgaatttgtgagtgtattttcgaa |
439 |
Q |
| |
|
|| |||| | ||||||||| || || ||| |||| || |||| | |||||| || ||||| |||| |||||||||| ||||||||| ||| |
|
|
| T |
2833890 |
taagtttcactttgtttgagacgttcaccggataattcatgaaactttatatggatgtatggatacatatagtttgtgaatttgtttgtgtattttagaa |
2833989 |
T |
|
| Q |
440 |
gatatctacgaagtgctggtgggaagaatttctcatacatggcatatacaaacattatgctagccattattgagcctaggtttgaccatatttccctaat |
539 |
Q |
| |
|
|||| |||||| |||||||| ||||| ||| ||||||||||||||||||||||||||||||| ||||| ||||| | |||||||| ||||| ||| |
|
|
| T |
2833990 |
aatatacacgaagattaggtgggaaaaatttgtcaaacatggcatatacaaacattatgctagccatgattgaacctagttgtgaccatagttccccaat |
2834089 |
T |
|
| Q |
540 |
tcccatct |
547 |
Q |
| |
|
| |||||| |
|
|
| T |
2834090 |
ttccatct |
2834097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 34 - 545
Target Start/End: Original strand, 2885450 - 2885958
Alignment:
| Q |
34 |
atagcctttccttgttccaaaacatgttgtatgtaagaggtagtgatgagttcacgatgccttttatggaaagttagggttaagaatcttttctcatctg |
133 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||| ||||| || ||||||||||| |||||||||||||| ||| ||||| | |||| | |
|
|
| T |
2885450 |
atagcctttccttgttccaacacatgttgtatgtaagaggaagtaatgagatcgcgatgccttttgtggaaagttagggtgaagcatcttaccacatc-g |
2885548 |
T |
|
| Q |
134 |
aactagggtatattgaaaatgattgtgttcttgaggtgatgtgatttgctgaccaccaaactttgacaccattgaactcatctgtgatctcttggttgtc |
233 |
Q |
| |
|
|| || | |||| ||| || | |||||| | || |||||| ||||||||||||||||| ||||||||||||||| |||||||| |||||| |
|
|
| T |
2885549 |
aa--agatcttcctgaagatgcttttcttcttggagctttgctatttgcagaccaccaaactttgactccattgaactcatcttcgatctcttcgttgtc |
2885646 |
T |
|
| Q |
234 |
atccatgcttagaacaagtggattttggctatctttgataacttcagctttaagtcttctagctctttgtgaagagttagcactaagatatgtttggatg |
333 |
Q |
| |
|
|||||||| || ||||| || ||||||||||| | |||||| |||| ||||| | | |||| || ||||| |||| |||||||||||||||| |
|
|
| T |
2885647 |
gtccatgctaaggacaagcggggattggctatcttccacaacttcggcttcaagtcgtttggctcgtttactcgagttcgcaccaagatatgtttggatg |
2885746 |
T |
|
| Q |
334 |
gttgtgtatgttttgttgtgtttgagattatctcctgatttctcatagaaggttattttgatgtaagggtacatgaagttggtgaatttgtgagtgtatt |
433 |
Q |
| |
|
||||||| |||| | | ||||||||| || || ||| |||| ||| ||||||| |||||||||| |||| | | || |||||||| |||| | |
|
|
| T |
2885747 |
attgtgtaagtttcgctttgtttgagacgctcgcccgatgattcattgaaagttatttggatgtaaggggacataagatctgtaaatttgtgtttgtagt |
2885846 |
T |
|
| Q |
434 |
ttcgaagatatctacgaagtgctggtgggaagaatttctcatacatggcatatacaaacattatgctagccattattgagcctaggtttgaccatatttc |
533 |
Q |
| |
|
|| || | | ||||||| | | |||| |||||| ||||||||||||||| |||||||| | ||||||| |||||||||| | |||| ||||||| |
|
|
| T |
2885847 |
tttcaacaaacttacgaagatcagatgggcagaattgctcatacatggcataaacaaacataaggctagccgcaattgagcctaattgtgacaatatttc |
2885946 |
T |
|
| Q |
534 |
cctaattcccat |
545 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
2885947 |
cccaattcccat |
2885958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 34 - 360
Target Start/End: Original strand, 2860881 - 2861207
Alignment:
| Q |
34 |
atagcctttccttgttccaaaacatgttgtatgtaagaggtagtgatgagttcacgatgccttttatggaaagttagggttaagaatcttttctcatctg |
133 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||| ||||| || ||||||||||| |||||||||||||||||| ||||| | |||| |
|
|
| T |
2860881 |
atagcctttccttgttccaacacatgttgtatgtaagaggaagtaatgagatcgcgatgccttttgtggaaagttagggttaagtatcttaccacatcga |
2860980 |
T |
|
| Q |
134 |
aactagggtatattgaaaatgattgtgttcttgaggtgatgtgatttgctgaccaccaaactttgacaccattgaactcatctgtgatctcttggttgtc |
233 |
Q |
| |
|
|| |||| | |||| ||| || | || ||| | || |||| ||||||||||||||||| |||||||||||||| ||||||| ||||| |
|
|
| T |
2860981 |
aattaggtcttcctgaagatgcttttcttgttggagctttgctgtttgaagaccaccaaactttgactccattgaactcatcctcaatctcttctttgtc |
2861080 |
T |
|
| Q |
234 |
atccatgcttagaacaagtggattttggctatctttgataacttcagctttaagtcttctagctctttgtgaagagttagcactaagatatgtttggatg |
333 |
Q |
| |
|
|||||||| || ||||| || ||||||||||| | |||||| ||||||||||| | |||||||| |||||||||| ||||||||||||||| |
|
|
| T |
2861081 |
gtccatgctaaggacaagcggtgattggctatcttccacaacttcggctttaagtctcttggctctttgactcgagttagcaccaagatatgtttggata |
2861180 |
T |
|
| Q |
334 |
gttgtgtatgttttgttgtgtttgaga |
360 |
Q |
| |
|
||||||| |||| | | ||||||||| |
|
|
| T |
2861181 |
attgtgtaagtttcgctttgtttgaga |
2861207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 36 - 360
Target Start/End: Original strand, 2866262 - 2866586
Alignment:
| Q |
36 |
agcctttccttgttccaaaacatgttgtatgtaagaggtagtgatgagttcacgatgccttttatggaaagttagggttaagaatcttttctcatctgaa |
135 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||| ||| ||||| || ||||||||||| |||||||||||||||||| ||||| | |||| || |
|
|
| T |
2866262 |
agcctttccttggtccaacacatgttgtatgtaagaggaagtaatgagatcgcgatgccttttgtggaaagttagggttaagtatcttaccacatcgaaa |
2866361 |
T |
|
| Q |
136 |
ctagggtatattgaaaatgattgtgttcttgaggtgatgtgatttgctgaccaccaaactttgacaccattgaactcatctgtgatctcttggttgtcat |
235 |
Q |
| |
|
|||| | |||| ||| || | || ||| | || |||| ||||||||||||||||| |||||||||||||| ||||||| ||||| | |
|
|
| T |
2866362 |
ttaggtcttcctgaagatgcttttcttgttggagctttgctgtttgaagaccaccaaactttgactccattgaactcatcctcaatctcttctttgtcgt |
2866461 |
T |
|
| Q |
236 |
ccatgcttagaacaagtggattttggctatctttgataacttcagctttaagtcttctagctctttgtgaagagttagcactaagatatgtttggatggt |
335 |
Q |
| |
|
||||||| || ||||| || ||||||||||| | |||||| ||||||||||| | |||||||| |||||||||| ||||||||||||||| | |
|
|
| T |
2866462 |
ccatgctaaggacaagcggtgattggctatcttccacaacttcggctttaagtctcttggctctttgactcgagttagcaccaagatatgtttggataat |
2866561 |
T |
|
| Q |
336 |
tgtgtatgttttgttgtgtttgaga |
360 |
Q |
| |
|
|||||| |||| | | ||||||||| |
|
|
| T |
2866562 |
tgtgtaagtttcgctttgtttgaga |
2866586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 132
Target Start/End: Complemental strand, 14577789 - 14577679
Alignment:
| Q |
22 |
ttcttcattgttatagcctttccttgttccaaaacatgttgtatgtaagaggtagtgatgagttcacgatgccttttatggaaagttagggttaagaatc |
121 |
Q |
| |
|
|||||||||| ||||| ||||||| ||||| |||| |||||||||||||||||||||||| |||| | |||||| ||||| ||||| |||||| | | |
|
|
| T |
14577789 |
ttcttcattgcaatagcttttccttcatccaacacatattgtatgtaagaggtagtgatgagaccacggtaccttttgtggaaggttagtgttaaggaac |
14577690 |
T |
|
| Q |
122 |
ttttctcatct |
132 |
Q |
| |
|
|||| |||||| |
|
|
| T |
14577689 |
ttttatcatct |
14577679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 40 - 140
Target Start/End: Original strand, 2910316 - 2910416
Alignment:
| Q |
40 |
tttccttgttccaaaacatgttgtatgtaagaggtagtgatgagttcacgatgccttttatggaaagttagggttaagaatcttttctcatctgaactag |
139 |
Q |
| |
|
||||||||||| || |||||||| ||||| |||||||||||||| |||| ||||||||| | ||| |||||||||| | ||||| || |||| ||| ||| |
|
|
| T |
2910316 |
tttccttgttctaacacatgttggatgtacgaggtagtgatgagatcaccatgccttttgtcgaaggttagggttaggtatcttatcacatccgaattag |
2910415 |
T |
|
| Q |
140 |
g |
140 |
Q |
| |
|
| |
|
|
| T |
2910416 |
g |
2910416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 2828689 - 2828590
Alignment:
| Q |
18 |
cctattcttcattgttatagcctttccttgttccaaaacatgttgtatgtaagaggtagtgatgagttcacgatgccttttatggaaagttagggttaag |
117 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||| || |||||||| || ||||| |||| || || ||||||| |||| ||||| |||||||||||| |
|
|
| T |
2828689 |
cctattcttcaatgtaatagcctttccttgttctaacacatgttggatataagacctagtaataagctcacgatattttttgtggaaggttagggttaag |
2828590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 545
Target Start/End: Original strand, 2866686 - 2866772
Alignment:
| Q |
459 |
tgggaagaatttctcatacatggcatatacaaacattatgctagccattattgagcctaggtttgaccatatttccctaattcccat |
545 |
Q |
| |
|
|||| |||||| ||||||||||||||| | |||||||| |||||| |||||||||| | |||| ||||||||| ||||||||| |
|
|
| T |
2866686 |
tgggcagaattgctcatacatggcataaagaaacattaggctagcggcaattgagcctaattgtgacaatatttccccaattcccat |
2866772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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