View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14163_low_7 (Length: 501)
Name: NF14163_low_7
Description: NF14163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14163_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 448; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 15 - 485
Target Start/End: Original strand, 24852031 - 24852502
Alignment:
| Q |
15 |
gagatgaaagtgtgtctaattttatgtgattttcctttacagcaagaagagcaacagtctaagttttggttagttggaaaaggaattttacacattcaaa |
114 |
Q |
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| T |
24852031 |
gagatgaaagtgtatctaattttatgtgattttcctttacagcaagaagagcaacagtctaagttttggttagttggaaaaggaattttacacattcaaa |
24852130 |
T |
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| Q |
115 |
atggattttacagcttgaggatgacctagtctaaggtttcccattgtgtaagtgtgttggctaagatcaaagaagcaggactactattagtagaaccagt |
214 |
Q |
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| T |
24852131 |
atggattttacagcttgaggatgacctagtctaaggtttcccattgtgtgagtgtgttggctaagatcaaagaagcagtactactattagtagagccagt |
24852230 |
T |
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| Q |
215 |
aggaaactaaagcttgaaaggcttgaacttgtataggcaatctaaaccaactgcaccttcaaggagcacttgattagatgcctgggatttaataaaacac |
314 |
Q |
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| T |
24852231 |
aggaaactaaagcttgaaaggcttgaacttgtataggcaatctaaaccaactgcaccttcaaggagcacttgattagatgcctgggatttaataaaacac |
24852330 |
T |
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| Q |
315 |
ttctgagcatgaagttcaaacaaaacattatcgtcatgagcaaatttagtaactgacatgagattatatagttaaattaatgaaaagctacactaggtcg |
414 |
Q |
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| T |
24852331 |
ttctgagcatgaagttcaaacaaaacattatcgtcatgagcaaatttagtaactgacatgagattatatagttaaattaatgaaaagctacactaggtcg |
24852430 |
T |
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| Q |
415 |
aggt-gagtataagaaaaaattgtgtagtgacctaaagaaagaattggcataccatgaccatttcccattat |
485 |
Q |
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| T |
24852431 |
aggtcgagtataagaaaaaattgtgtagtgacctaaagaaagaattggcataccatgaccatttcccattat |
24852502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 228 - 294
Target Start/End: Original strand, 24839872 - 24839938
Alignment:
| Q |
228 |
ttgaaaggcttgaacttgtataggcaatctaaaccaactgcaccttcaaggagcacttgattagatg |
294 |
Q |
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| T |
24839872 |
ttgaaaggcttgaacttgtataggccatctaaaccaactgcaccttcaaggagcacctgattagatg |
24839938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 35 - 138
Target Start/End: Original strand, 24839604 - 24839711
Alignment:
| Q |
35 |
tttatgtgattttcctttacagcaagaagagcaacagtctaagttttggttagttggaaaaggaattttacac----attcaaaatggattttacagctt |
130 |
Q |
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| T |
24839604 |
tttatctgatttccctatacagcaagatgtgcaacattctaagttttgcttacttggcaaaggaattttacacacaaattcaaaatggattttactgttt |
24839703 |
T |
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| Q |
131 |
gaggatga |
138 |
Q |
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|||||||| |
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| T |
24839704 |
gaggatga |
24839711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 444 - 485
Target Start/End: Original strand, 24851138 - 24851179
Alignment:
| Q |
444 |
acctaaagaaagaattggcataccatgaccatttcccattat |
485 |
Q |
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| T |
24851138 |
acctaaagaaggaattggcataccttgaccatttcccattat |
24851179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 24848067 - 24848140
Alignment:
| Q |
35 |
tttatgtgattttcctttacagcaagaagagcaacagtctaagttttggttagttggaaaaggaattttacaca |
108 |
Q |
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| T |
24848067 |
tttatatgattttcctatacaacaagaagagaaacattccaagctttggttacttggcaaacaaattttacaca |
24848140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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