View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14164_high_1 (Length: 810)
Name: NF14164_high_1
Description: NF14164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14164_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 566; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 19 - 656
Target Start/End: Complemental strand, 31020991 - 31020360
Alignment:
| Q |
19 |
attaacacctatttatagatgcacaattgcacacacaaaccgcaccaagtgttaccattaaaaaggagcataacgcacgagattacccaatcaacatcaa |
118 |
Q |
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| T |
31020991 |
attaacacctatttatagatgcacaattgcacacacaaaccgcaccaagtgttaccattaaaaaggagcataacacacgagattacccaatcaacatcaa |
31020892 |
T |
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| Q |
119 |
cctataataacagagaggcgcaaaaacacatttattactcctcaagtcttctgcaaagagacaaatctatgcaatcaagaaattcaaattccacacatat |
218 |
Q |
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| T |
31020891 |
cctataataacagagaggcgcaaaaacaaatttattactcctcaagtcttctgcaaagagacaaatctatgcaatcaagaaattcaaattccacacatat |
31020792 |
T |
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| Q |
219 |
tctaaattctccaccattatacatctcagaccatccaatcaagatcagacaactcacattttcaaatcgataaagacggtacaaagtactgaattaaaac |
318 |
Q |
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| T |
31020791 |
tctaaattctccaccattatacatctcagaccatccaatcaagatcagacaactcacattttcaaatcgataaatacggtacaaagtactgaattaaaac |
31020692 |
T |
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| Q |
319 |
atagatccaacaactcgagatgcaaaacgatatgaaatgtaggattttttccaaatgcaggaaatccaaatccaaatccacattcacatttctagtgacc |
418 |
Q |
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| T |
31020691 |
atagatccaacaactcgagatgcaaaacgatatgaaatgtaggattttttccaaatgcaggaaatccaaa------tccacattcacatttctagtgacc |
31020598 |
T |
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| Q |
419 |
gttcaccaatttcaccattccaacatcacatatatcaaattcaaatcataccaatccgatccattcaaaattacataaaaaatacatcgtgcaatcacta |
518 |
Q |
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| T |
31020597 |
attcaccaatttcaccattccaacatcacatatatcaaattcaaatcataccaatccgatccattcaaaattacataaaaaatacatcgtgcaatcacta |
31020498 |
T |
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| Q |
519 |
ttataaacnnnnnnnttaatttttcttagtttactgtataattgatgtatatgatctataatattgacaaaatacatacgttaatacgttataacctaaa |
618 |
Q |
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| T |
31020497 |
ttataaacaaaaaaattaattttttttagtttactgtataattgatgtatctgatctataatattgacaaaatacatacgttaataagttataacctaaa |
31020398 |
T |
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| Q |
619 |
aagtggttttttgcgaccacatggtgcatttaaagcat |
656 |
Q |
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| T |
31020397 |
aagtggttttttgcgaccacatggtgcatttaaagcat |
31020360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 717 - 810
Target Start/End: Complemental strand, 31020299 - 31020206
Alignment:
| Q |
717 |
tctttatctttaggattgagaacatacatcgttggtagtatcaaaagcaagccaaacggtggaaaactgtccccagcccaatttcctctgagct |
810 |
Q |
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| T |
31020299 |
tctttatctttaggattgagaacatacatcgttggtagtatcaaaagcaagccaaacggtggaaaactgaccccagcccaatttcctctgagct |
31020206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 751 - 809
Target Start/End: Original strand, 9770274 - 9770332
Alignment:
| Q |
751 |
gtagtatcaaaagcaagccaaacggtggaaaactgtccccagcccaatttcctctgagc |
809 |
Q |
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| T |
9770274 |
gtagtatcataagcaagccaaacggtagaaaattgaccccaaccaagtttcctctgagc |
9770332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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