View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14164_high_12 (Length: 441)
Name: NF14164_high_12
Description: NF14164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14164_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 426
Target Start/End: Complemental strand, 9426347 - 9425939
Alignment:
| Q |
19 |
taatgaccctacattgttatttgaaacctcttgttaacaatccacgtgggagtagcatatccataacannnnnnnnngaa-tatcaaggttcacaagcaa |
117 |
Q |
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| T |
9426347 |
taatgaccctacattgttatttgaaacctcttgttaacaatccacgtgggagtagcatatccataacatatagagttaaacttttaaggttcacaagcaa |
9426248 |
T |
|
| Q |
118 |
aaacattcgaaaagttggagtataaggaaaaaatgaatgtgaggggaaaggtaaaaagcatcctattgtttttattttccttcatcattcaactgttact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9426247 |
aaacattcgaaaagttggagtataaggaaaaaatgaatgtgaggggaaaggtaaaaagcatcctattgtttttattttccttcatcattcaactgttact |
9426148 |
T |
|
| Q |
218 |
ttcactattttttaatcaatgtagagcatcttacgcaggggacactttttcaaagatttcaagtatatttcccttttgatttcacatgtgcacacgaaaa |
317 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9426147 |
ttcactattctttaatcaatgtagagcatcttacgcaggggacactttttcaaagatttcaagtatatttcccttttgatttcacatgtgcacacgaaaa |
9426048 |
T |
|
| Q |
318 |
tggaggggtcaattttgtgtaggggtcatttaaaacataaatgttgcatggatatataactttttctacccagtgcaacctgtataatcacatgcaaact |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||| | |
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| T |
9426047 |
tggaggggtcaattttgtgtaggggtcatttaaaacataaatgttgcatggagatataacttttcctacccagtgctacctgtataatcacatgcaaatt |
9425948 |
T |
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| Q |
418 |
gtaactaat |
426 |
Q |
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| T |
9425947 |
gtaattaat |
9425939 |
T |
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