View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14164_high_13 (Length: 432)
Name: NF14164_high_13
Description: NF14164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14164_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 22868752 - 22868344
Alignment:
| Q |
1 |
caataaatcaaaatggttgtttggtttggcatagtacattaaatannnnnnnnnnnnnataaactcattaaatggagatcctaatgtggattcatatatc |
100 |
Q |
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||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
22868752 |
caataaatcaaaaaggttgttaggtttggcatagtacattaaatcttttttactttttataaactcattaaatggagatcctaatgtggattcatatatc |
22868653 |
T |
|
| Q |
101 |
gacatgcatcatcaatatagttgcctccggacaccggtaaccccatgtttctataggatttcatcattggtacccatatggaaagattcatgaaatgaca |
200 |
Q |
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||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22868652 |
gacatgcattatcaatatagttgcctccggacaccagtaaccccatgtttctataggatttcatcattggtacccatatggaaagattcatgaaatgaca |
22868553 |
T |
|
| Q |
201 |
tttataaccatatatattcattcatgcaccatgttcacacaaaattgactaggaactttaaaataaaagatcactcaagaaggaaataaaaaagcagaat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
22868552 |
tttataaccatatatattcattcatgcaccatgttcacacaaaattgactaggaacttt-----aaaagatcactcaagaaggaaataaaaaagcagaat |
22868458 |
T |
|
| Q |
301 |
ttaaggtttatttttctccctcaaaatgataggacgaaataacaatgaatgataaagaaaaccccaaacacccattcatatgattaaatacattgacctt |
400 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22868457 |
ttaaggtttatttttctcccacaaaatgataggacgaaataacaatgaatgataaagaaaaccccaaacacccattcatatgattaaatacattgacctt |
22868358 |
T |
|
| Q |
401 |
ttatttaccatgtc |
414 |
Q |
| |
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|| ||||||||||| |
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| T |
22868357 |
ttttttaccatgtc |
22868344 |
T |
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