View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14164_high_18 (Length: 310)
Name: NF14164_high_18
Description: NF14164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14164_high_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 88 - 300
Target Start/End: Complemental strand, 29549437 - 29549225
Alignment:
| Q |
88 |
tgtactccaccctcaaagagaattgaatctcaacaatccatcatctcaatcctccattgttatcctcaaaaagtaaccatggccgatgaagttattcttc |
187 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29549437 |
tgtagtccacgctcaaagagaattgaatctcaacaatccatcatctcaatcctccattgttatcctcaaaaagtaaccatggccgatgaagttattcttc |
29549338 |
T |
|
| Q |
188 |
tagatttttggccaagtccatttggaataagagttagaatagcacttgctgaaaagggtatcaagtataaatacatagaagaagaattaatgtcattgaa |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29549337 |
tagatttttggccaagtccatttggaataagagttagaatagcacttgctgaaaagggtatcaagtataaatacatagaagaagaattaatgtcattgaa |
29549238 |
T |
|
| Q |
288 |
aaagagtcctttg |
300 |
Q |
| |
|
||||||||||||| |
|
|
| T |
29549237 |
aaagagtcctttg |
29549225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 164 - 277
Target Start/End: Complemental strand, 29511340 - 29511227
Alignment:
| Q |
164 |
ccatggccgatgaagttattcttctagatttttggccaagtccatttggaataagagttagaatagcacttgctgaaaagggtatcaagtataaatacat |
263 |
Q |
| |
|
||||||| |||||||| ||||| ||||||| ||| ||||||||||||| || || || |||||||| || |||||||||||||||||| || | |||| |
|
|
| T |
29511340 |
ccatggctgatgaagtgattctgctagattactgggcaagtccatttggcatgagggtcagaatagccctagctgaaaagggtatcaagcatgagtacaa |
29511241 |
T |
|
| Q |
264 |
agaagaagaattaa |
277 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
29511240 |
agaagaagatttaa |
29511227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 164 - 277
Target Start/End: Complemental strand, 29535594 - 29535481
Alignment:
| Q |
164 |
ccatggccgatgaagttattcttctagatttttggccaagtccatttggaataagagttagaatagcacttgctgaaaagggtatcaagtataaatacat |
263 |
Q |
| |
|
||||||| ||| |||| ||||| ||||||| ||| |||||||||||| || || || |||||||| || ||||||||||||||||||||| | |||| |
|
|
| T |
29535594 |
ccatggctgataaagtgattctgctagattactgggtaagtccatttggcatgagggtcagaatagccctagctgaaaagggtatcaagtatgagtacag |
29535495 |
T |
|
| Q |
264 |
agaagaagaattaa |
277 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
29535494 |
agaagaagacttaa |
29535481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 277
Target Start/End: Complemental strand, 29518458 - 29518345
Alignment:
| Q |
164 |
ccatggccgatgaagttattcttctagatttttggccaagtccatttggaataagagttagaatagcacttgctgaaaagggtatcaagtataaatacat |
263 |
Q |
| |
|
||||||| |||||||| ||||| ||||||| ||| |||||||||||| || || || |||||||| | ||||||||||||||||| || | |||| |
|
|
| T |
29518458 |
ccatggctgatgaagtgattctgctagattactgggtaagtccatttggcatgagggtcagaatagccttagctgaaaagggtatcaaacatgagtacag |
29518359 |
T |
|
| Q |
264 |
agaagaagaattaa |
277 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
29518358 |
agaagaagatttaa |
29518345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 277
Target Start/End: Complemental strand, 29507519 - 29507407
Alignment:
| Q |
165 |
catggccgatgaagttattcttctagatttttggccaagtccatttggaataagagttagaatagcacttgctgaaaagggtatcaagtataaatacata |
264 |
Q |
| |
|
|||||| |||||||| ||||| || ||| |||||||||||||||||||| ||| | | ||||| | |||||||||||||||||| || | |||| | |
|
|
| T |
29507519 |
catggctgatgaagtgattctgcttaattactggccaagtccatttggaatgagactcaaaatagtcttagctgaaaagggtatcaagcatgagtacaga |
29507420 |
T |
|
| Q |
265 |
gaagaagaattaa |
277 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
29507419 |
gaagaagacttaa |
29507407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University