View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14164_high_23 (Length: 266)
Name: NF14164_high_23
Description: NF14164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14164_high_23 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 266
Target Start/End: Original strand, 34544158 - 34544401
Alignment:
| Q |
20 |
gaggcccctaaaacactccaccaaagttttccaatttttcccttaataattggaaaaactgaaaccctttggataagaactctgtcacctgtattttctg |
119 |
Q |
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| T |
34544158 |
gaggcccctaaaacactccaccaaagttttccaatttttcccttaataattggaaaaactgaaaccctttggataagaactctgtcacctgtattttctg |
34544257 |
T |
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| Q |
120 |
tggaattcatgtaccttaacctgtttacattctctacccatactaaaatgtttcagctgtcagtgtttctaattttcagtttacaacgttaaacgcataa |
219 |
Q |
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| T |
34544258 |
tggaattcatgtaccttaacctgtttacattctctacccatactaaaatgttt---ctatcagtatttctaattttcagtttacaacgttaaacgcataa |
34544354 |
T |
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| Q |
220 |
cttacataataaattatttcttatgttatagactaataaactaaaac |
266 |
Q |
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| T |
34544355 |
cttacataataaattatttcttatgttatagactaataaactaaaac |
34544401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 65 - 247
Target Start/End: Original strand, 34915519 - 34915695
Alignment:
| Q |
65 |
ataattggaaaaactgaaaccctttggataagaactctgtcacctgtattttctgtggaattcatgtaccttaacctgtttacattctctacccatacta |
164 |
Q |
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| T |
34915519 |
ataattggaaaaactgaaaccctttagataggaaccctgtcatctat---ttctgtggaattcacgtaccgtaacttgtttacattctttatccatacta |
34915615 |
T |
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| Q |
165 |
aaatgtttcagctgtcagtgtttctaattttcagtttacaacgttaaacgcataacttacataataaattatttcttatgtta |
247 |
Q |
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| T |
34915616 |
aaaaaatt---ctgtcagtatttccaattttccatttacaacattacacacataacttacgcaataaattatttcttatgtta |
34915695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 38452927 - 38452983
Alignment:
| Q |
118 |
tgtggaattcatgtac--cttaacctgtttacattctctacccatactaaaatgttt |
172 |
Q |
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| T |
38452927 |
tgtggaattcatgtacctcttaatctgtttacaatctctatccataccaaaatgttt |
38452983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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