View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14164_high_29 (Length: 253)
Name: NF14164_high_29
Description: NF14164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14164_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 21048212 - 21048450
Alignment:
| Q |
1 |
ctgtaaacagctctgttacattgaaagtgagaagccatctaaatctcttcgatggcttaatttgagagggtgctcaagacttgtaaggtattcagttttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21048212 |
ctgtaaacagctctgttacattgaaagtgagaagccatctagatctcttcgatggcttaatttgagagggtgctcaagacttgtaaggtattcagttttt |
21048311 |
T |
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| Q |
101 |
tccgaggaactggagtacttgaacttggatttcacggcaattgaagaacttcctcacaacctcaacctcttagcaaagtt-nnnnnnnctatcattaaga |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
21048312 |
tccgaggaactggagtacttgaacttggatttcacggcaattgaagaacttcctcacaacctcaacctcttaccaaagttaaaaaaaactatcattaaga |
21048411 |
T |
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| Q |
200 |
ggaagtgatattgagatattgcctgctagcatacaacat |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
21048412 |
ggaagtgatattgagatattgcctgctagcatacaacat |
21048450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 21060541 - 21060779
Alignment:
| Q |
1 |
ctgtaaacagctctgttacattgaaagtgagaagccatctaaatctcttcgatggcttaatttgagagggtgctcaagacttgtaaggtattcagttttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21060541 |
ctgtaaacagctctgttacattgaaagtgagaagccatctagatctcttcgatggcttaatttgagagggtgctcaagacttgtaaggtattcagttttt |
21060640 |
T |
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| Q |
101 |
tccgaggaactggagtacttgaacttggatttcacggcaattgaagaacttcctcacaacctcaacctcttagcaaagtt-nnnnnnnctatcattaaga |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
21060641 |
tccgaggaactggagtacttgaacttggatttcacggcaattgaagaacttcctcacaacctcaacctcttaccaaagttaaaaaaaactatcattaaga |
21060740 |
T |
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| Q |
200 |
ggaagtgatattgagatattgcctgctagcatacaacat |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
21060741 |
ggaagtgatattgagatattgcctgctagcatacaacat |
21060779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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