View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14164_high_3 (Length: 680)
Name: NF14164_high_3
Description: NF14164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14164_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 567; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 11 - 661
Target Start/End: Original strand, 24405726 - 24406376
Alignment:
| Q |
11 |
ccaagaatatacatactcatgctttcgacatgataagatcgttcataactcaacaagacgttcttgacaaaaagctgttaaaatagttcaaactcataat |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
24405726 |
ccaacaatatacatactcatgctttcgacatgataagatcgttcataactcaacaagacgttcttgaccaaaagctgttaaaatagttcaaactcgtaat |
24405825 |
T |
|
| Q |
111 |
atcaggctgctaaaagcttttgcagatatcacaaattcacaatttcacaacaaatatgggacataactagtcaagaaataacaaatttccattttcacaa |
210 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| || |||| ||||||||||||||||||||| |
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| T |
24405826 |
atcaggctgccaaaagcttttgcagatatcacaaattcacaatttcacaacacatatggtgcataactatgcaggaaacaacaaatttccattttcacaa |
24405925 |
T |
|
| Q |
211 |
tgtcaattttataagaatgatttggaacaataatgaaaaacaattaaaattggaccaaacacatcaagcatatatatgcttcaaaatatcaaattataaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24405926 |
tgtcaattttataagaatgatttggaacaataatgaaaaacaattaaaattggaccaaacacatcaagcatatatatgcttcaaaatatcaaattataaa |
24406025 |
T |
|
| Q |
311 |
atagcaaattataacaatatcatgacacaagaaccattcaccaaaaaccttccaaatataaagaaaagcagatatgttgatcatagtttgataaataaaa |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24406026 |
atagcaaattataacaatatcatgacacaagaaccattaaccaaaaaccttccaaatataaagaaaagcagatatgttgatcatagtttgataaataaaa |
24406125 |
T |
|
| Q |
411 |
cgaagcataaaataaatccacatgacaaatcctagactaagattgtaaaatgttaaaatataatggcaaataaatccttgactaatttcatgatttgttg |
510 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24406126 |
cgaagcataaaataaatccacatgacaaatccttgactgagaacataaaatgttaaaatataatggcaaataaatccttgactaatttcatgatttgttg |
24406225 |
T |
|
| Q |
511 |
cataatcattcaaaagcccaaccgacttccttaagaagttccgcgtattcctcaggactgaagtcattctcaacgttgaaaattttgcgaatctcctcca |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24406226 |
cataatcattcaaaagcccaaccgacttccttaagaagttccgcatattcctccggactgaagtcattctcaacattgaaaattttgcgaatctcctcca |
24406325 |
T |
|
| Q |
611 |
ccgtcttatccttgatagtttctgctacatcctgacatgtaagttccagta |
661 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24406326 |
ccgtcttatccttgatagtttctgctacatcctggcatgtaagttccagta |
24406376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 586 - 656
Target Start/End: Complemental strand, 24412908 - 24412838
Alignment:
| Q |
586 |
ttgaaaattttgcgaatctcctccaccgtcttatccttgatagtttctgctacatcctgacatgtaagttc |
656 |
Q |
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|||||||| | ||||| |||||||||||||||||||||||||| |||| |||||| ||| ||||||||||| |
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| T |
24412908 |
ttgaaaatctggcgaacctcctccaccgtcttatccttgatagattctactacattctggcatgtaagttc |
24412838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 404 - 474
Target Start/End: Complemental strand, 5647222 - 5647152
Alignment:
| Q |
404 |
aataaaacgaagcataaaataaatccacatgacaaatcctagactaagattgtaaaatgttaaaatataat |
474 |
Q |
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||||||||||||||||| ||||||||||||| | |||||| ||| ||||||| |||||||| |||||| |
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| T |
5647222 |
aataaaacgaagcataacataaatccacatgtctaatccttaactgtgattgtaccatgttaaattataat |
5647152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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