View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14164_high_32 (Length: 238)
Name: NF14164_high_32
Description: NF14164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14164_high_32 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 43168710 - 43168503
Alignment:
| Q |
16 |
caagaatgcatcctaattttaatttgatgttattggcgaattggtttagtcaaaaagagtgttagtcaaccgttttctgttaacagtgagcagtttgtta |
115 |
Q |
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| T |
43168710 |
caagaatgcatcctaattttaatttgatgttattggcgaattggtttagtcaaaaagagtgttagtcaaccgttttctgttaacagtgagcagtttgtta |
43168611 |
T |
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| Q |
116 |
gttggttgttaaggctttaagtagttgctgatgcatagccttcaaatcattattccagaaaccattgtaattatctagtgttcattgtgaggatattctg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43168610 |
gttggttgttaaggctttaagtagttgctgatgcatagccttcaaatcattattccagaaaccattgtaattatctagtgttcattgtgaggatattctg |
43168511 |
T |
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| Q |
216 |
taacaaag |
223 |
Q |
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|||||||| |
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| T |
43168510 |
taacaaag |
43168503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 43219488 - 43219713
Alignment:
| Q |
16 |
caagaatgcatcctaattttaatttgatgttattggcgaattggtttagtcaaaaagagtgttagtcaaccgttttctgttaacagtgagcagtttgtta |
115 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
43219488 |
caagaatgcatcctaattttaatttgatgttattggctaattggtttagtcaacaagagtgtttgtcaacctttttctgttaacagtgagcagtttgtta |
43219587 |
T |
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| Q |
116 |
gttggttgttaaggctttaagtagttgctgatgcatagccttcaaatcattattccagaaaccattgtaattatctagtgttcattgtgaggatattctg |
215 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43219588 |
gttggttgttaaggttttaagtagttgctgatgcatagccttcaattcattattccagaaactattgtaattatctagtgttcattgtgaggatattctg |
43219687 |
T |
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| Q |
216 |
taacaaa---gagagagattgtactc |
238 |
Q |
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|||| || |||||||||||||||| |
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| T |
43219688 |
taactaagttgagagagattgtactc |
43219713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 43168503 - 43168460
Alignment:
| Q |
195 |
gttcattgtgaggatattctgtaacaaagagagagattgtactc |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43168503 |
gttcattgtgaggatattctgtaacaaagagagagattgtactc |
43168460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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