View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14164_high_37 (Length: 232)
Name: NF14164_high_37
Description: NF14164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14164_high_37 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 6186734 - 6186948
Alignment:
| Q |
1 |
accaacttttccgatcgatgatgttagcttattcaaccttgtttgcaaaggtgtttcctcgtcgatgtcattgcttatcgaactcatcatttgtccccat |
100 |
Q |
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| T |
6186734 |
accaacttttccgatcgatgatgttagcttattcaaccttgtttgcaaaggtgtttcctcatcgatgtcattgcttatcgaactcatcatttgtccccat |
6186833 |
T |
|
| Q |
101 |
gttgtgttcataccgaccgatgtaacaagcatttttgcatatccatcgacaacttttgtcccggaaagcaaaaaaggatgaaaattttgatttatctcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6186834 |
gttgtgttcataccgaccgatgtaacaagcatttttgcatatccatcgacaacttttgtcccggaaagcaaaaaaggatgaaaattttgatttatctcta |
6186933 |
T |
|
| Q |
201 |
catgatcactctcac |
215 |
Q |
| |
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||||||||||||||| |
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| T |
6186934 |
catgatcactctcac |
6186948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 4243678 - 4243892
Alignment:
| Q |
1 |
accaacttttccgatcgatgatgttagcttattcaaccttgtttgcaaaggtgtttcctcgtcgatgtcattgcttatcgaactcatcatttgtccccat |
100 |
Q |
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|||||| |||||||| || ||||| || ||||||||||||||||||||||| ||||| |||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
4243678 |
accaacctttccgattgaggatgtaagtttattcaaccttgtttgcaaaggggtttcttcgttgatgtcattgcttatggaactcatcatttgtccccat |
4243777 |
T |
|
| Q |
101 |
gttgtgttcataccgaccgatgtaacaagcatttttgcatatccatcgacaacttttgtcccggaaagcaaaaaaggatgaaaattttgatttatctcta |
200 |
Q |
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|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||| |
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| T |
4243778 |
gttgtgttcataccaaccgatgtaacgagcatttttgcatatccatcgacaacttttgttccggaaagcaaaaaaggatgaaagttttgattaatctcta |
4243877 |
T |
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| Q |
201 |
catgatcactctcac |
215 |
Q |
| |
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||||||| ||||||| |
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| T |
4243878 |
catgatcgctctcac |
4243892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 38358424 - 38358526
Alignment:
| Q |
76 |
tatcgaactcatcatttgtccccatgttgtgttcataccgaccgatgtaacaagcatttttgcatatccatcgacaacttttgtcccggaaagcaaaaaa |
175 |
Q |
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|||||| ||||||||||||||||||| |||||| | || || ||||| |||||||| | ||||||||||| |||||||||| ||||| | ||||||| |
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| T |
38358424 |
tatcgagctcatcatttgtccccatgatgtgtttttgcccacagatgttacaagcatctgagcatatccatccacaacttttgcgccggacaacaaaaaa |
38358523 |
T |
|
| Q |
176 |
gga |
178 |
Q |
| |
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||| |
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|
| T |
38358524 |
gga |
38358526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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