View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14164_low_1 (Length: 908)

Name: NF14164_low_1
Description: NF14164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14164_low_1
NF14164_low_1
[»] chr6 (9 HSPs)
chr6 (1-889)||(717894-718766)
chr6 (650-889)||(702592-702831)
chr6 (650-889)||(712607-712846)
chr6 (656-889)||(710861-711094)
chr6 (399-509)||(702982-703092)
chr6 (399-509)||(712346-712456)
chr6 (385-509)||(711242-711366)
chr6 (688-889)||(722384-722585)
chr6 (644-885)||(716459-716700)
[»] chr4 (3 HSPs)
chr4 (435-509)||(5279096-5279170)
chr4 (435-509)||(5281917-5281991)
chr4 (435-509)||(5287104-5287178)
[»] chr5 (2 HSPs)
chr5 (435-509)||(20353314-20353388)
chr5 (435-509)||(20358497-20358571)
[»] chr2 (1 HSPs)
chr2 (435-509)||(6236083-6236157)
[»] chr1 (2 HSPs)
chr1 (752-813)||(35313394-35313455)
chr1 (56-97)||(36383210-36383251)


Alignment Details
Target: chr6 (Bit Score: 732; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 732; E-Value: 0
Query Start/End: Original strand, 1 - 889
Target Start/End: Complemental strand, 718766 - 717894
Alignment:
Q  1 acattgtaatatatagtgatgtagagttcgaaatatggacatctcatttattcgtcttaaaagtgaaatctaactactatactacttgataaaaaat-ac 99  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  718766 acattataatatgtagtgatgtagagttcgaaatatggacatctcatttattcgtcttaaaagtaaaatctaactactatactacttgataaaaaattac 718667  T
Q  100 ttacttttactaacatatatacaagaccaacatatatacaagaccaatgtccgtgaatattcaatttgttcttgaaaagaataatgtccaactactaata 199  Q
    ||||||||||||||||||||||                 | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  718666 ttacttttactaacatatatac-----------------atgaccaatgtccatgaatattcaatttgttcttgaaaagaataatgtccaactactaata 718584  T
Q  200 aaaaatgtatgctttgattaattaaaatttactaggtctttacacgcttgtgcaactaaattaactatggacttgttcaatgtcacttgcttataaatag 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  718583 aaaaatgtatgctttgattaattaaaatttactaggtctttacacgctagtgcaactaaattaactatggacttgttcaatgtcacttgcttataaatag 718484  T
Q  300 acattatgtttgcattgtgaaatatatcacccttacataaacatatacaagcaaattacacgaataaaatttctnnnnnnnnnncatgaagactacttac 399  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||    
T  718483 acattatgtttgcattgtgaaatatatcatccttacataaacatatacaagcaaattacacgaataaaatttctaaaaaaaaa-catgaagactacttac 718385  T
Q  400 ttgtttgtgacagccttcttggccttagcatcatgtgcctttgcctttgatcccagccctctacaagacttttgtgtggctatcaatgacaccaagaatg 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  718384 ttgtttgtgacagccttcttggccttagcatcatgtgcctttgcctttgatcccagccctctacaagacttttgtgtggctatcaatgacaccaagaatg 718285  T
Q  500 gtggtatgtaa-ctcttttaaattcacaatatttggttaaagatttctttatctatttttagttttctggttcagctagttgagtcaattgaaactatca 598  Q
    ||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  718284 gtggtatgtatgctcttttaaattaacaatatttggttaaagatttctttatctatttttagttttctggttcaactagttgagtcaattgaaactatca 718185  T
Q  599 tctagaaatttcattgatatatacatatataagagtagtatatgatttctttaatgaatttgttttgcagtttttgtgaatggcaaagtctgcaaggatc 698  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  718184 tctagaaatttcattgatatatacatatataagagtagtatatgatttctttaatgaatttgttttgcagtttttgtgaatggcaaagtctgcaaggatc 718085  T
Q  699 caaagcttgctacaccaaatgatttctttttctcagtgaaagaaggaaacacatcaaatccactgggttcaaaagtgacaccggttacggttaatgatat 798  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  718084 caaagcttgctacaccaaatgatttctttttctcagtaaaagaaggaaacacatcaaatccactgggttcaaaagtgacaccggttacagttaatgatat 717985  T
Q  799 actaggactaaacactttaggtatctctcttgctcgcattgacttcgcatctaggggactaaatcctccacatactcatcctagagccact 889  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  717984 actaggactaaacactttaggtatctctcttgctcgcattgacttcgcatctaggggactaaatcctccacatactcaccctagagccact 717894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 650 - 889
Target Start/End: Complemental strand, 702831 - 702592
Alignment:
Q  650 taatgaatttgttttgcagtttttgtgaatggcaaagtctgcaaggatccaaagcttgctacaccaaatgatttctttttctcagtgaaagaaggaaaca 749  Q
    |||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  702831 taatgattttgttttgcagtttttgtgaatggcaaattttgcaaggatccaaagcttgctacaccaaatgatttctttttctcagtaaaagaaggaaaca 702732  T
Q  750 catcaaatccactgggttcaaaagtgacaccggttacggttaatgatatactaggactaaacactttaggtatctctcttgctcgcattgacttcgcatc 849  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  702731 catcaaatccactgggttcaaaagtgacaccggttacagttaatgatatactaggactaaacactttaggtatctctcttgctcgcattgacttcgcatc 702632  T
Q  850 taggggactaaatcctccacatactcatcctagagccact 889  Q
     |||||||||||||||||||||||||| ||||||||||||    
T  702631 aaggggactaaatcctccacatactcaccctagagccact 702592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 650 - 889
Target Start/End: Original strand, 712607 - 712846
Alignment:
Q  650 taatgaatttgttttgcagtttttgtgaatggcaaagtctgcaaggatccaaagcttgctacaccaaatgatttctttttctcagtgaaagaaggaaaca 749  Q
    |||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  712607 taatgattttgttttgcagtttttgtgaatggcaaattttgcaaggatccaaagcttgctacaccaaatgatttttttttctcagtgaaagaaggaaaca 712706  T
Q  750 catcaaatccactgggttcaaaagtgacaccggttacggttaatgatatactaggactaaacactttaggtatctctcttgctcgcattgacttcgcatc 849  Q
     |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  712707 tatcaaatccactgggttcaaaagtgacaccggttacagttaatgatatactaggactaaacactttaggtatctctcttgctcgcattgacttcgcatc 712806  T
Q  850 taggggactaaatcctccacatactcatcctagagccact 889  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  712807 taggggactaaatcctccacatactcaccctagagccact 712846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 656 - 889
Target Start/End: Complemental strand, 711094 - 710861
Alignment:
Q  656 atttgttttgcagtttttgtgaatggcaaagtctgcaaggatccaaagcttgctacaccaaatgatttctttttctcagtgaaagaaggaaacacatcaa 755  Q
    |||| ||||||||| |||||||| |||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  711094 attttttttgcagtgtttgtgaacggcaaattctgtaagaatccaaagcttgctacaccaaatgatttctttttctcagtgaaagaaggaaacacatcaa 710995  T
Q  756 atccactgggttcaaaagtgacaccggttacggttaatgatatactaggactaaacactttaggtatctctcttgctcgcattgacttcgcatctagggg 855  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  710994 atccactgggttcaaaagtgacaccggttacggttaatgatatactaggactaaacactttaggtatctctcttgctcgcattgacttcgcatcaagggg 710895  T
Q  856 actaaatcctccacatactcatcctagagccact 889  Q
    ||||||||| ||||||||||| ||||||||||||    
T  710894 actaaatcccccacatactcaccctagagccact 710861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 399 - 509
Target Start/End: Complemental strand, 703092 - 702982
Alignment:
Q  399 cttgtttgtgacagccttcttggccttagcatcatgtgcctttgcctttgatcccagccctctacaagacttttgtgtggctatcaatgacaccaagaat 498  Q
    ||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  703092 cttgtttgtgacagccttcttagctttagcatcttgtgcctttgcctttgatcccagccctttacaggacttttgtgtggctatcaatgacaccaagaat 702993  T
Q  499 ggtggtatgta 509  Q
    |||||||||||    
T  702992 ggtggtatgta 702982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 399 - 509
Target Start/End: Original strand, 712346 - 712456
Alignment:
Q  399 cttgtttgtgacagccttcttggccttagcatcatgtgcctttgcctttgatcccagccctctacaagacttttgtgtggctatcaatgacaccaagaat 498  Q
    ||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  712346 cttgtttgtgacagccttcttagctttagcatcttgtgcctttgcctttgatcccagccctttacaggacttttgtgtggctatcaatgacaccaagaat 712445  T
Q  499 ggtggtatgta 509  Q
    |||||||||||    
T  712446 ggtggtatgta 712456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 385 - 509
Target Start/End: Complemental strand, 711366 - 711242
Alignment:
Q  385 atgaagactacttacttgtttgtgacagccttcttggccttagcatcatgtgcctttgcctttgatcccagccctctacaagacttttgtgtggctatca 484  Q
    ||||||| || |||||||||| | ||||||||| | || || ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  711366 atgaagagtatttacttgtttttcacagccttcctagcattggcatcttgtgcctttgcatttgatcctagccctctacaagacttttgtgtggctatca 711267  T
Q  485 atgacaccaagaatggtggtatgta 509  Q
    |||||||||| |  |||||||||||    
T  711266 atgacaccaaaacgggtggtatgta 711242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 688 - 889
Target Start/End: Original strand, 722384 - 722585
Alignment:
Q  688 ctgcaaggatccaaagcttgctacaccaaatgatttctttttctcagtgaaagaaggaaacacatcaaatccactgggttcaaaagtgacaccggttacg 787  Q
    |||||| |||||||| |||| |||| || ||||||||||||||||||| |||||||||     ||| | |||| | ||| |  ||||||||   || ||     
T  722384 ctgcaaagatccaaaacttgttacagcagatgatttctttttctcagtaaaagaaggagttgtatcgagtccagttggtactcaagtgacattagtcaca 722483  T
Q  788 gttaatgatatactaggactaaacactttaggtatctctcttgctcgcattgacttcgcatctaggggactaaatcctccacatactcatcctagagcca 887  Q
    |||||||| ||| ||||| |||||||| | ||| ||||||||||||| |||||||| ||| ||| |||  ||||||||||||| ||||| ||||||||||    
T  722484 gttaatgagatattaggattaaacactcttggtgtctctcttgctcgtattgactttgcacctaagggtataaatcctccacacactcaccctagagcca 722583  T
Q  888 ct 889  Q
    ||    
T  722584 ct 722585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 644 - 885
Target Start/End: Original strand, 716459 - 716700
Alignment:
Q  644 tttctttaatgaatttgttttgcagtttttgtgaatggcaaagtctgcaaggatccaaagcttgctacaccaaatgatttctttttctcagtgaaagaag 743  Q
    ||||||| || |||||  ||| |||| || |||||||| |||  || ||| || ||||| |||| ||||||| ||||||||||||||||| | |||||||    
T  716459 tttctttgatcaatttaattttcagtgttggtgaatggaaaatgctacaaagaaccaaaacttgttacaccagatgatttctttttctcaataaaagaag 716558  T
Q  744 gaaacacatcaaatccactgggttcaaaagtgacaccggttacggttaatgatatactaggactaaacactttaggtatctctcttgctcgcattgactt 843  Q
     ||||| ||||| || ||| |||||  |||||||||     || |||| ||| ||| ||||| |||| ||| | ||||||||| ||||||| ||||| ||    
T  716559 aaaacatatcaagtcaacttggttcgcaagtgacactacccacagttagtgagatattaggattaaatactcttggtatctcttttgctcgtattgattt 716658  T
Q  844 cgcatctaggggactaaatcctccacatactcatcctagagc 885  Q
     ||| | | ||| ||||||||||||||| |||| ||||||||    
T  716659 tgcaccaaagggtctaaatcctccacatgctcaccctagagc 716700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 435 - 509
Target Start/End: Complemental strand, 5279170 - 5279096
Alignment:
Q  435 tgcctttgcctttgatcccagccctctacaagacttttgtgtggctatcaatgacaccaagaatggtggtatgta 509  Q
    ||||||||| | ||||||||||||||| |||||||||||||| || ||||| ||| ||||  |||||||||||||    
T  5279170 tgcctttgcttatgatcccagccctctccaagacttttgtgttgcaatcaaagaccccaaagatggtggtatgta 5279096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 435 - 509
Target Start/End: Original strand, 5281917 - 5281991
Alignment:
Q  435 tgcctttgcctttgatcccagccctctacaagacttttgtgtggctatcaatgacaccaagaatggtggtatgta 509  Q
    ||||||||| | ||| ||||||||||| |||||||||||||| || ||||| ||| ||||  |||||||||||||    
T  5281917 tgcctttgcttatgaccccagccctctccaagacttttgtgttgcaatcaaagaccccaaagatggtggtatgta 5281991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 435 - 509
Target Start/End: Complemental strand, 5287178 - 5287104
Alignment:
Q  435 tgcctttgcctttgatcccagccctctacaagacttttgtgtggctatcaatgacaccaagaatggtggtatgta 509  Q
    ||||||||| | ||| ||||||||||| |||||||||||||| || ||||| ||| ||||  |||||||||||||    
T  5287178 tgcctttgcttatgaccccagccctctccaagacttttgtgttgcaatcaaagaccccaaagatggtggtatgta 5287104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 435 - 509
Target Start/End: Original strand, 20353314 - 20353388
Alignment:
Q  435 tgcctttgcctttgatcccagccctctacaagacttttgtgtggctatcaatgacaccaagaatggtggtatgta 509  Q
    ||||||||| | ||| ||||||||||| |||||||||||||| || ||||| ||| ||||  |||||||||||||    
T  20353314 tgcctttgcttatgaccccagccctctccaagacttttgtgttgcaatcaaagaccccaaagatggtggtatgta 20353388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 435 - 509
Target Start/End: Complemental strand, 20358571 - 20358497
Alignment:
Q  435 tgcctttgcctttgatcccagccctctacaagacttttgtgtggctatcaatgacaccaagaatggtggtatgta 509  Q
    ||||||||| | ||| ||||||||||| |||||||||||||| || ||||| ||| ||||  |||||||||||||    
T  20358571 tgcctttgcttatgaccccagccctctccaagacttttgtgttgcaatcaaagaccccaaagatggtggtatgta 20358497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 435 - 509
Target Start/End: Complemental strand, 6236157 - 6236083
Alignment:
Q  435 tgcctttgcctttgatcccagccctctacaagacttttgtgtggctatcaatgacaccaagaatggtggtatgta 509  Q
    ||||||||| | ||| ||||||||||| |||||||||||||| || ||||| ||| ||||  |||||||||||||    
T  6236157 tgcctttgcttatgaccccagccctctccaagacttttgtgttgcaatcaaagaccccaaagatggtggtatgta 6236083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 752 - 813
Target Start/End: Original strand, 35313394 - 35313455
Alignment:
Q  752 tcaaatccactgggttcaaaagtgacaccggttacggttaatgatatactaggactaaacac 813  Q
    ||||||||||| || ||||||||||| || || ||||||||||| ||| ||||||| |||||    
T  35313394 tcaaatccactcggatcaaaagtgactccagtgacggttaatgaaatattaggactcaacac 35313455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 36383210 - 36383251
Alignment:
Q  56 cttaaaagtgaaatctaactactatactacttgataaaaaat 97  Q
    |||||| ||||| | |||||||||||||||||||||||||||    
T  36383210 cttaaatgtgaattttaactactatactacttgataaaaaat 36383251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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