View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14164_low_10 (Length: 454)
Name: NF14164_low_10
Description: NF14164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14164_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 11 - 364
Target Start/End: Complemental strand, 15638014 - 15637641
Alignment:
| Q |
11 |
gagagaagaacaagatttcagtgaacatcaagtggatcagtactcgcaatcctcatctttgggttagtatta---gtctctctttcttttgtttggtttt |
107 |
Q |
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| T |
15638014 |
gagagaagaacaagatttcagtgaacatcaagtcgatcagtactcgcaatcctcatctttgggttagtattattagtctctctttcttttgtttggtttt |
15637915 |
T |
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| Q |
108 |
tctacattgttgaattcttgcatggatcactcttgaagttcttt------------------ttctcttttccttataatttgttttgaccgtactataa |
189 |
Q |
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| T |
15637914 |
-ctacattgttgagttcttgcatgaatcactcttgatgttctttgtcaaactctttttctttttctcctttccttatattttgttttgaccgtactataa |
15637816 |
T |
|
| Q |
190 |
attagtggtagaattaataaatatttgatgatcaagatttgcaacgaagtattgtcgcaattcttgatattataaataattagccacaattgtcatgttc |
289 |
Q |
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| T |
15637815 |
attagtggtagaattaataaatatttgatgatcaagatttgcaacgaagtattgttgcaattcttgatattataaataattagccacaattgtcatgttc |
15637716 |
T |
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| Q |
290 |
ttgcaatttaaaatcttgattatgaccaccctatttttgaatgtgtttaattgtggtttttaaagtttctgactc |
364 |
Q |
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| T |
15637715 |
ttgcaatttaaaatcttgattatgaccaccctacttttgaatgtgtttaattgtggtttttaaagtttgtgactc |
15637641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 15592790 - 15592542
Alignment:
| Q |
11 |
gagagaagaacaagatttcagtgaacatcaagtggatcagtactcgcaatcctcatctttgggttagt---attagtctctctttcttttgtttggtttt |
107 |
Q |
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| T |
15592790 |
gagagaagaacaagatttgagtaaacatgaagtgggtcagttatggcaatcctcatctctgggttagtattattagtctctctttcttttgtttggtttt |
15592691 |
T |
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| Q |
108 |
tctacattgttgaattcttgcatggatcactcttgaag------------------ttctttttctcttttccttataatttgttttgaccgtactataa |
189 |
Q |
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| T |
15592690 |
t-tacattgttgagtttttgcatggattactcttgaagttctttgtcaaactctttttcttttgctcttttccttataatttgttttaaccctactataa |
15592592 |
T |
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| Q |
190 |
attagtggtagaattaataaatatttgatgatcaagatttgcaacgaagt |
239 |
Q |
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| T |
15592591 |
attagtggtagaattaataaacatgtgatgatcaagatttgcaatgaagt |
15592542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 206 - 357
Target Start/End: Complemental strand, 15587903 - 15587752
Alignment:
| Q |
206 |
ataaatatttgatgatcaagatttgcaacgaagtattgtcgcaattcttgatattataaataattagccacaattgtcatgttcttgcaatttaaaatct |
305 |
Q |
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||||| || ||||||||||||||||| | ||| | ||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
15587903 |
ataaacatgtgatgatcaagatttgcgaagaatttatgtcgcaattcttgatattgtaaataattagccacaattgtcatgctgttgcaatttaaaatct |
15587804 |
T |
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| Q |
306 |
tgattatgaccaccctatttttgaatgtgtttaattgtggtttttaaagttt |
357 |
Q |
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| T |
15587803 |
tgattatgaacgccctactttcgaatgtgttcaattgtggtttttaaagttt |
15587752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 11 - 148
Target Start/End: Complemental strand, 15635537 - 15635401
Alignment:
| Q |
11 |
gagagaagaacaagatttcagtgaacatcaagtggatcagtactcgcaatcctcatctttgggttagtattagtctctctttcttttgtttggtttttct |
110 |
Q |
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|||||||||||||||||| | ||||| |||||| ||||| | |||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
15635537 |
gagagaagaacaagatttgtctaaacatgaagtgggtcagttccgccaatcctcatctttgggttagtattaatctctctttcttttgtttgg-ttttct |
15635439 |
T |
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| Q |
111 |
acattgttgaattcttgcatggatcactcttgaagttc |
148 |
Q |
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| T |
15635438 |
acattgttcagttcttgcatggatcactcttgaagttc |
15635401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 15588069 - 15587961
Alignment:
| Q |
11 |
gagagaagaacaagatttcagtgaacatcaagtggatcagtactcgcaatcctcatctttgggttagtattagtctctctttcttttgtttggtttttct |
110 |
Q |
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|||||||||||||||||| ||| || || |||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
15588069 |
gagagaagaacaagatttgagtaaagatgaagtgggtcagtactggcaatcctcatctttgggttagtattagtttctctttcttttgtttgg-ttttct |
15587971 |
T |
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| Q |
111 |
acattgttga |
120 |
Q |
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|||||||||| |
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| T |
15587970 |
acattgttga |
15587961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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