View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14164_low_11 (Length: 454)

Name: NF14164_low_11
Description: NF14164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14164_low_11
NF14164_low_11
[»] chr3 (19 HSPs)
chr3 (1-436)||(34516402-34516856)
chr3 (2-293)||(27616103-27616414)
chr3 (2-267)||(34504980-34505266)
chr3 (2-145)||(34525881-34526024)
chr3 (180-319)||(34525743-34525882)
chr3 (356-436)||(27632360-27632440)
chr3 (2-145)||(34477214-34477356)
chr3 (2-315)||(34462194-34462504)
chr3 (31-145)||(27615700-27615816)
chr3 (31-139)||(34504793-34504903)
chr3 (185-269)||(34373148-34373232)
chr3 (223-315)||(34484894-34484985)
chr3 (5-80)||(34486477-34486553)
chr3 (71-134)||(27625454-27625517)
chr3 (199-262)||(34486279-34486341)
chr3 (71-134)||(34511227-34511290)
chr3 (200-262)||(34504662-34504723)
chr3 (200-262)||(27615575-27615636)
chr3 (238-315)||(34475301-34475378)
[»] chr2 (4 HSPs)
chr2 (185-261)||(10532896-10532972)
chr2 (185-261)||(10526073-10526149)
chr2 (222-269)||(10524708-10524755)
chr2 (222-270)||(10531014-10531062)
[»] scaffold1215 (1 HSPs)
scaffold1215 (185-261)||(65-141)


Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 34516856 - 34516402
Alignment:
Q  1 tttcttccaaaattatatcttaaattataaaagggagtcacataatgcatgccaatacacacatgtgctaacactcactttaatagcctgtatttgttga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34516856 tttcttccaaaattatatcttaaattataaaagggagtcacataatgcatgccaatacacacatgtgctaacactcactttaatagcctgtatttgttga 34516757  T
Q  101 cttgagatacaattctgattgtttctctaaatctcatgatctaagcctatg-------------------attgtaattactatattagtatactgacag 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |                   ||||||||||||||||||||||||||||||    
T  34516756 cttgagatacaattctgattgtttctctaaatctcatgatctaaggctagggttgcactaacctactataattgtaattactatattagtatactgacag 34516657  T
Q  182 tctaaaggatcatgtagcaagaggtttactcattaatttctcattattttctttttgaatatgaaaactttcattccaaaccttgaattttataaagttc 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34516656 tctaaaggatcatgtagcaagaggtttactcattaatttctcattattttctttttgaatatgaaaactttcattccaaaccttgaattttataaagttc 34516557  T
Q  282 tgtggcactcccttatcttgccagatttacttgattgtagttcacaatcatattctcttgagaagtatatctttagtctatactcttcgtctcttagaac 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34516556 tgtggcactcccttatcttgccagatttacttgattgtagttcacaatcatattctcttgagaagtatatctttagtctatactcttcgtctcttagaac 34516457  T
Q  382 atgtttatttatttctagcaatatctgaattctaaagcggtaacctgtaatacat 436  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34516456 aagtttatttatttctagcaatatctgaattctaaagcggtaacctgtaatacat 34516402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 2 - 293
Target Start/End: Complemental strand, 27616414 - 27616103
Alignment:
Q  2 ttcttccaaaattatatcttaaattataa-aagggagtcacataatgcatgccaatacacacatgtgctaacactcactttaatagcctgtatttgttga 100  Q
    ||||| |||||||||||||||||||  |  |||||||||||||| ||||||||||||||||||||| || | || ||||| |||||||||||||||||||    
T  27616414 ttcttgcaaaattatatcttaaatttgattaagggagtcacatattgcatgccaatacacacatgtactgatacccacttcaatagcctgtatttgttga 27616315  T
Q  101 cttgagatacaattctgattgtttctctaaatctcatgatctaagccta-------------------tgattgtaattactatattagtatactgacag 181  Q
    |||||||||||| |||| | ||||||||||||||||||||||||| |||                   ||||| ||||||| |||||| |||| ||||||    
T  27616314 cttgagatacaaatctgttggtttctctaaatctcatgatctaagtctagctttgcacttacctactatgattctaattacgatattactatattgacag 27616215  T
Q  182 tctaaaggatcatgtagcaagaggtttactcattaatttctcattattttctttttgaatatgaaaactttcattccaaaccttgaattttataaagttc 281  Q
    | ||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||| ||| ||||    
T  27616214 tataaaggaacatgtagcaagagatttactcattaatttatcattattttctttctgaatataaaaactttcattccaaaccttgaattttgtaatgttc 27616115  T
Q  282 tgtggcactccc 293  Q
    ||||||| ||||    
T  27616114 tgtggcattccc 27616103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 2 - 267
Target Start/End: Complemental strand, 34505266 - 34504980
Alignment:
Q  2 ttcttccaaaattatatcttaaattataa-aagggagtcacataatgcatgccaa-tacacacatgtgctaacactcactttaatagcctgtatttgttg 99  Q
    ||||| |||||||||||||||||||  |  |||||||||||||| |||||||||| ||||||||||| || | |||||||||||||||||||||||||||    
T  34505266 ttcttgcaaaattatatcttaaatttgattaagggagtcacatattgcatgccaaatacacacatgtactgatactcactttaatagcctgtatttgttg 34505167  T
Q  100 acttgagatacaattctgattgtttctctaaatctcatgatctaag-------------------cctatgattgtaattactatattagtatactgaca 180  Q
    |||||||||||||||||| | |||||||||||||||||||||||||                    |||||||| ||||||| |||||| |||| |||||    
T  34505166 acttgagatacaattctgttggtttctctaaatctcatgatctaagtctagctttgcacttacctactatgattctaattacgatattactatattgaca 34505067  T
Q  181 gtctaaaggatcatgtagcaagaggtttactcattaatttctcattattttctttttgaatatgaaaactttcattccaaaccttga 267  Q
    || ||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||    
T  34505066 gtataaaggaacatgtagcaagagatttactcattaatttttcattattttctttctgaatataaaaactttcattccaaaccttga 34504980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 2 - 145
Target Start/End: Complemental strand, 34526024 - 34525881
Alignment:
Q  2 ttcttccaaaattatatcttaaattataaaagggagtcacataatgcatgccaatacacacatgtgctaacactcactttaatagcctgtatttgttgac 101  Q
    ||||| |||||||||||||||| ||    |||||||||||||||||||||||||||||||||||| ||   |||||||||||||||||||||||||||||    
T  34526024 ttcttgcaaaattatatcttaatttgattaagggagtcacataatgcatgccaatacacacatgtactgttactcactttaatagcctgtatttgttgac 34525925  T
Q  102 ttgagatacaattctgattgtttctctaaatctcatgatctaag 145  Q
    ||||||||||||| |||| |||||||||||| ||||||||||||    
T  34525924 ttgagatacaattatgatggtttctctaaatatcatgatctaag 34525881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 180 - 319
Target Start/End: Complemental strand, 34525882 - 34525743
Alignment:
Q  180 agtctaaaggatcatgtagcaagaggtttactcattaatttctcattattttctttttgaatatgaaaactttcattccaaaccttgaattttataaagt 279  Q
    |||||||| |||||| ||  ||||||||||| ||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||    
T  34525882 agtctaaatgatcatttaataagaggtttacgcattaatttatcattattttctttctgaatatgaaaactttcactccaaaccttgaattttgtaaagt 34525783  T
Q  280 tctgtggcactcccttatcttgccagatttacttgattgt 319  Q
    ||| |||||| ||||| | |||||||||||||||||||||    
T  34525782 tctttggcacacccttctattgccagatttacttgattgt 34525743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 356 - 436
Target Start/End: Complemental strand, 27632440 - 27632360
Alignment:
Q  356 agtctatactcttcgtctcttagaacatgtttatttatttctagcaatatctgaattctaaagcggtaacctgtaatacat 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27632440 agtctatactcttcgtctcttagaacatgtttatttatttctagcaatatctgaattctaaagcggttacctgtaatacat 27632360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 2 - 145
Target Start/End: Complemental strand, 34477356 - 34477214
Alignment:
Q  2 ttcttccaaaattatatcttaaatt-ataaaagggagtcacataatgcatgccaatacacacatgtgctaacactcactttaatagcctgtatttgttga 100  Q
    ||||||| |||||||||||||| || || ||||| |||| ||||||| ||||| ||||| | |||| ||| ||||||||| |||||| ||||||| ||||    
T  34477356 ttcttccgaaattatatcttaatttgattaaagg-agtctcataatgtatgccgatacataaatgtacta-cactcacttaaatagcttgtatttattga 34477259  T
Q  101 cttgagatacaattctgattgtttctctaaatctcatgatctaag 145  Q
    |||||||| |||||| ||| |||||||||||| ||||||||||||    
T  34477258 cttgagatgcaattcagatggtttctctaaatatcatgatctaag 34477214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 2 - 315
Target Start/End: Complemental strand, 34462504 - 34462194
Alignment:
Q  2 ttcttccaaaattatatcttaaatt--ataaaagggagtcacataatgcatgccaatacacacatgtgctaacactcactttaatagcctgtatttgttg 99  Q
    ||||||| |||||||||||||||||  || ||||| || | ||||||| ||||| ||||| | |||| ||| ||| ||||| |||||| ||||||| |||    
T  34462504 ttcttccgaaattatatcttaaatttgattaaagg-agcctcataatgtatgccgatacataaatgtacta-cacccacttaaatagcttgtatttattg 34462407  T
Q  100 acttgagatacaattctgattgtttctctaaatctcatgatctaagcctatgattgtaattactata-ttagtatactgacagtctaaaggatcatgtag 198  Q
    ||||||||| |||||| ||| ||||||||||||||    | ||  ||       |  ||||| |||| ||| |||| ||||||| |||||||| ||||||    
T  34462406 acttgagatgcaattcagatggtttctctaaatct----agctttgcagtaacctacaattattatacttactatattgacagtttaaaggataatgtag 34462311  T
Q  199 caagaggtttactcattaatttctcattattttctttttgaatatgaaaactttcattccaaaccttgaattttataaagttctgtggcactcccttatc 298  Q
    | ||||||||||||| ||| || |||||||| ||||| | |||||||||||| | ||| |||||||||| |||| || |||| |||| ||| ||||| |     
T  34462310 cgagaggtttactcagtaacttatcattattgtctttctaaatatgaaaactgttattgcaaaccttgagttttgtagagttgtgtgacaccccctttta 34462211  T
Q  299 ttgccagatttacttga 315  Q
    | |||||| ||||||||    
T  34462210 tcgccagaattacttga 34462194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 27615816 - 27615700
Alignment:
Q  31 aagggagtcacataatgcatgccaatacacacatgtgctaacactcactttaatagcctgtatttgttga--cttgagatacaattctgattgtttctct 128  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||| ||| |  || || ||||||   ||| |||||||||| ||| |||| |||    
T  27615816 aagggagtcacataatgcatgccaatgcacacatgtactaacactcacttaaatggtatgaatgtgttgaattttgtgatacaattcagatggtttatct 27615717  T
Q  129 aaatctcatgatctaag 145  Q
    |||||||||||| ||||    
T  27615716 aaatctcatgatttaag 27615700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 34504903 - 34504793
Alignment:
Q  31 aagggagtcacataatgcatgccaatacacacatgtgctaacactcactttaatagcctgtatttgttga--cttgagatacaattctgattgtttctct 128  Q
    |||||||||||||||||||||||||| ||||||||| | |||||||| || ||| |  || || ||||||   ||| |||||||||| ||| |||| |||    
T  34504903 aagggagtcacataatgcatgccaatgcacacatgtaccaacactcatttaaatggtatgaatgtgttgaattttgtgatacaattcagatggtttatct 34504804  T
Q  129 aaatctcatga 139  Q
    |||||||||||    
T  34504803 aaatctcatga 34504793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 269
Target Start/End: Original strand, 34373148 - 34373232
Alignment:
Q  185 aaaggatcatgtagcaagaggtttactcattaatttctcattattttctttttgaatatgaaaactttcattccaaaccttgaat 269  Q
    ||||||||| ||| |||||| |||||||| ||||   || ||||| ||||| |||||||||||||| |||||||||||| |||||    
T  34373148 aaaggatcacgtaacaagagatttactcaataatccatcgttattgtctttctgaatatgaaaactctcattccaaaccatgaat 34373232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 315
Target Start/End: Complemental strand, 34484985 - 34484894
Alignment:
Q  223 cattattttctttttgaatatgaaaactttcattccaaaccttgaattttataaagttctgtggcactcccttatcttgccagatttacttga 315  Q
    ||||||| ||||| ||||||||| |||||||||||||||  ||||||||| || || | |||| ||||||||| | |||||||| ||||||||    
T  34484985 cattattgtctttctgaatatgataactttcattccaaaatttgaattttgtatagctgtgtgacactccctt-tattgccagaattacttga 34484894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 34486553 - 34486477
Alignment:
Q  5 ttccaaaattatatcttaaattataa-aagggagtcacataatgcatgccaatacacacatgtgctaacactcactt 80  Q
    ||||||||||||||||||| ||  |  |||||||| ||||||||||||||||| ||||||||| |||||||| ||||    
T  34486553 ttccaaaattatatcttaactttgattaagggagttacataatgcatgccaatgcacacatgtactaacacttactt 34486477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 27625517 - 27625454
Alignment:
Q  71 acactcactttaatagcctgtatttgttgacttgagatacaattctgattgtttctctaaatct 134  Q
    |||| ||||| |||||| ||||||| |||||||||||||||| || ||| ||||||||||||||    
T  27625517 acacccacttaaatagcttgtatttattgacttgagatacaactcagatggtttctctaaatct 27625454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 34486341 - 34486279
Alignment:
Q  199 caagaggtttactcattaatttctcattattttctttttgaatatgaaaactttcattccaaac 262  Q
    |||||||||||| ||||||||| |||||||| | ||| |||||||||||| |||||||||||||    
T  34486341 caagaggtttacgcattaatttatcattattctttttctgaatatgaaaa-tttcattccaaac 34486279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 34511290 - 34511227
Alignment:
Q  71 acactcactttaatagcctgtatttgttgacttgagatacaattctgattgtttctctaaatct 134  Q
    |||| ||||| |||||| ||||||| |||||||||||||||| || ||| ||||||||||||||    
T  34511290 acacccacttaaatagcttgtatttattgacttgagatacaactcagatggtttctctaaatct 34511227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 262
Target Start/End: Complemental strand, 34504723 - 34504662
Alignment:
Q  200 aagaggtttactcattaatttctcattattttctttttgaatatgaaaactttcattccaaac 262  Q
    ||||||||||| ||||||||| |||||||| | ||| |||||||||||| |||||||||||||    
T  34504723 aagaggtttacgcattaatttatcattattgtttttctgaatatgaaaa-tttcattccaaac 34504662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 262
Target Start/End: Complemental strand, 27615636 - 27615575
Alignment:
Q  200 aagaggtttactcattaatttctcattattttctttttgaatatgaaaactttcattccaaac 262  Q
    ||||||||||| ||||| ||| |||||||| | ||| |||||||||||| |||||||||||||    
T  27615636 aagaggtttacacattagtttatcattattgtttttctgaatatgaaaa-tttcattccaaac 27615575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 315
Target Start/End: Complemental strand, 34475378 - 34475301
Alignment:
Q  238 gaatatgaaaactttcattccaaaccttgaattttataaagttctgtggcactcccttatcttgccagatttacttga 315  Q
    ||||||||||||| | |||||||||||||| |||| || |||  |||||||| ||||| | | |||||| ||||||||    
T  34475378 gaatatgaaaactgttattccaaaccttgagttttgtagagtagtgtggcacccccttttatcgccagaattacttga 34475301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 261
Target Start/End: Complemental strand, 10532972 - 10532896
Alignment:
Q  185 aaaggatcatgtagcaagaggtttactcattaatttctcattattttctttttgaatatgaaaactttcattccaaa 261  Q
    ||||||||| ||| |||||| |||||||| |||||| |||||||| ||||| |||||||||||||| ||||||||||    
T  10532972 aaaggatcacgtaacaagagatttactcaataatttatcattattgtctttctgaatatgaaaactctcattccaaa 10532896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 261
Target Start/End: Complemental strand, 10526149 - 10526073
Alignment:
Q  185 aaaggatcatgtagcaagaggtttactcattaatttctcattattttctttttgaatatgaaaactttcattccaaa 261  Q
    ||||||||| ||| |||||| |||||| | |||| | |||||||| ||||| |||||||||||||| ||||||||||    
T  10526149 aaaggatcacgtaacaagagatttactaaataatctatcattattgtctttctgaatatgaaaactctcattccaaa 10526073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 10524755 - 10524708
Alignment:
Q  222 tcattattttctttttgaatatgaaaactttcattccaaaccttgaat 269  Q
    |||||||| ||||| || ||||||||||||||||||||||||||||||    
T  10524755 tcattattgtctttctggatatgaaaactttcattccaaaccttgaat 10524708  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 10531062 - 10531014
Alignment:
Q  222 tcattattttctttttgaatatgaaaactttcattccaaaccttgaatt 270  Q
    |||||||| ||||| || |||||||||||||||||||||| ||||||||    
T  10531062 tcattattgtctttctggatatgaaaactttcattccaaatcttgaatt 10531014  T

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Target: scaffold1215 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1215
Description:

Target: scaffold1215; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 261
Target Start/End: Complemental strand, 141 - 65
Alignment:
Q  185 aaaggatcatgtagcaagaggtttactcattaatttctcattattttctttttgaatatgaaaactttcattccaaa 261  Q
    ||||||||| ||| |||||| |||||| | |||| | |||||||| ||||| |||||||||||||| ||||||||||    
T  141 aaaggatcacgtaacaagagatttactaaataatctatcattattgtctttctgaatatgaaaactctcattccaaa 65  T

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