View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14164_low_12 (Length: 449)
Name: NF14164_low_12
Description: NF14164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14164_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 20 - 436
Target Start/End: Complemental strand, 11134026 - 11133610
Alignment:
| Q |
20 |
attacatgtatcctaccaggaactaattgcatacagaggcgttaaatttcacaatggatttcccttttgctaaacaaactcctaagcatgtgttaatatc |
119 |
Q |
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| T |
11134026 |
attacatgtatcctaccaggaactaattgcatgcagaggcgttaaatttcacaatggatttcccttttgctaaacaaactcctaagcatgtgttaatatc |
11133927 |
T |
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| Q |
120 |
nnnnnnntggaaaagctggcatcaagaaactgattttacctgagacgaatattcctttttgtttgatgattcagatatcttctgtttcttccatttctca |
219 |
Q |
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| T |
11133926 |
aaaaaaatggaaaagctggcatcaagaaactgattttacctgagacgaatattcctttttgtttgatgattcagaattcttctgtttcttccatttctca |
11133827 |
T |
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| Q |
220 |
gaaaaatccccaaaattaaatgggccacctaatccaaaggatgatagactaatggaagcagctcttgcagccaaagggttaaaaacaggcatcgaatcag |
319 |
Q |
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| T |
11133826 |
gaaaaatccccaaaattaaatgggccacctaatccaaaggatgatagactaatggaagcagctcttccagccaaagggttaaaaacaggcatcgaatcag |
11133727 |
T |
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| Q |
320 |
cttccttgttaccattatgaaagtcagatctctcagaaagaggaacaatgccatctttcccatgaaatagcttaaaagccatatcaaaactaggaccatc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11133726 |
cttccttgttaccattatgaaagtcagatctctcagaaagaggaacaatgccatctttcccatgaaatagcttaaaagccatatcaaaactaggaccatc |
11133627 |
T |
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| Q |
420 |
ttcaaatataggaccct |
436 |
Q |
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| T |
11133626 |
ttcaaatataggaccct |
11133610 |
T |
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