View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14164_low_19 (Length: 364)

Name: NF14164_low_19
Description: NF14164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14164_low_19
NF14164_low_19
[»] chr7 (3 HSPs)
chr7 (15-319)||(3929921-3930225)
chr7 (15-313)||(3928575-3928873)
chr7 (48-310)||(21317471-21317733)
[»] chr2 (5 HSPs)
chr2 (21-309)||(13576218-13576506)
chr2 (57-280)||(34571445-34571668)
chr2 (171-280)||(34562651-34562760)
chr2 (57-280)||(34578913-34579136)
chr2 (57-280)||(34584662-34584885)
[»] chr8 (8 HSPs)
chr8 (15-308)||(43479645-43479938)
chr8 (51-308)||(38799395-38799652)
chr8 (51-308)||(38821865-38822122)
chr8 (51-280)||(25865600-25865829)
chr8 (27-280)||(26592044-26592297)
chr8 (93-281)||(41943886-41944074)
chr8 (201-308)||(38807046-38807153)
chr8 (173-274)||(44343977-44344078)
[»] scaffold0197 (1 HSPs)
scaffold0197 (48-310)||(30909-31170)
[»] chr5 (8 HSPs)
chr5 (15-309)||(12531356-12531650)
chr5 (15-309)||(12546969-12547263)
chr5 (127-309)||(9866627-9866809)
chr5 (117-309)||(9894610-9894800)
chr5 (174-272)||(9870004-9870102)
chr5 (162-259)||(38735528-38735625)
chr5 (230-309)||(9903568-9903647)
chr5 (228-277)||(12538675-12538724)
[»] chr4 (6 HSPs)
chr4 (21-307)||(24860416-24860702)
chr4 (51-271)||(34748655-34748875)
chr4 (164-247)||(53290749-53290832)
chr4 (111-151)||(44771097-44771137)
chr4 (57-136)||(40035830-40035909)
chr4 (177-268)||(40036062-40036153)
[»] chr1 (3 HSPs)
chr1 (170-280)||(7594130-7594240)
chr1 (99-208)||(17769233-17769342)
chr1 (99-208)||(1539185-1539294)
[»] chr3 (1 HSPs)
chr3 (100-208)||(27440846-27440954)


Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 15 - 319
Target Start/End: Complemental strand, 3930225 - 3929921
Alignment:
Q  15 cacagattccgtccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttc 114  Q
    ||||||||||||||||||||||||||| | || || ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3930225 cacagattccgtccaggaacagtcgcacttcgtgagatccgcaagtatcagaagagcactgaacttctcattaggaaacttccattccaaagattggttc 3930126  T
Q  115 gtgaaatcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttga 214  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3930125 gtgaaatcgctcaggatttcaaaactgatcttcgatttcagagtagtgctgtttctgctcttcaagaagctgctgaagcgtatcttgttggtttgtttga 3930026  T
Q  215 ggatacgaatctttgtgctattcatgctaagagagttaccattatgcctaaggatattcaacttgcaagaagaatcagaggcgaaagggcttagaagatc 314  Q
     ||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  3930025 agatacgaatctttgtgccattcatgctaagagagttactattatgccgaaggatattcaacttgcaagaagaatcagaggcgaaagggcttagaagatt 3929926  T
Q  315 tgatt 319  Q
    |||||    
T  3929925 tgatt 3929921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 15 - 313
Target Start/End: Complemental strand, 3928873 - 3928575
Alignment:
Q  15 cacagattccgtccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttc 114  Q
    ||||||||| | |||||||||||||||||||| |||||| | |||||||| |||| ||||||||||||||||||||||||||| ||| ||||||||||||    
T  3928873 cacagattcagaccaggaacagtcgcattgcgtgaaatcaggaagtatcaaaagatcactgagcttctcattaggaaacttcctttcaaaagattggttc 3928774  T
Q  115 gtgaaatcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttga 214  Q
     ||||||||||||||||||||||||||||||| |||| ||||  || ||||||||||| |||||||||   |||||||||| | ||||||||||||||||    
T  3928773 atgaaatcgctcaggatttcaaaactgatctccgattccagatcagcgctgtttctgctcttcaagaaatcgctgaagcgtgtattgttggtttgtttga 3928674  T
Q  215 ggatacgaatctttgtgctattcatgctaagagagttaccattatgcctaaggatattcaacttgcaagaagaatcagaggcgaaagggcttagaagat 313  Q
     |||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| | ||||||||  |||| || |||||||||||    
T  3928673 agatatgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcaggtgcgagagagcttagaagat 3928575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 48 - 310
Target Start/End: Original strand, 21317471 - 21317733
Alignment:
Q  48 gaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctca 147  Q
    |||||||| ||||| |||||||||||||||||||| || || ||||||||||||||| |  | ||||||||||||||||||||||||||||| |||||||    
T  21317471 gaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctca 21317570  T
Q  148 gatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagag 247  Q
    |||| ||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||    
T  21317571 gattccagagcagtgctgtttctgctcttcaagaagcggctgaagcttatcttgttggtttgtttgaagatacaaatctttgcgctattcatgctaagag 21317670  T
Q  248 agttaccattatgcctaaggatattcaacttgcaagaagaatcagaggcgaaagggcttagaa 310  Q
    |||||| |||||||||||||||||||||||||||||||||||  | || ||||||||||||||    
T  21317671 agttactattatgcctaaggatattcaacttgcaagaagaattcgtggtgaaagggcttagaa 21317733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 21 - 309
Target Start/End: Original strand, 13576218 - 13576506
Alignment:
Q  21 ttccgtccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaa 120  Q
    |||||||| ||||| |||||  | || |||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||    
T  13576218 ttccgtcctggaaccgtcgctcttcgtgaaatccgcaagtatcagaagagcaccgagcttctcataaggaagcttccattccaaagattggttcgagaaa 13576317  T
Q  121 tcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatac 220  Q
    | ||||||||||||||||| |||||| | ||||| || |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  13576318 ttgctcaggatttcaaaacggatctccgttttcaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatac 13576417  T
Q  221 gaatctttgtgctattcatgctaagagagttaccattatgcctaaggatattcaacttgcaagaagaatcagaggcgaaagggcttaga 309  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13576418 gaatctttgtgctattcatgctaagagggttactattatgcctaaggatattcaacttgcgagaagaatcagaggcgaaagggcttaga 13576506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 57 - 280
Target Start/End: Complemental strand, 34571668 - 34571445
Alignment:
Q  57 aagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagatttcaga 156  Q
    |||||||||||||| || || ||| | ||  | ||||||||||||||  |  | ||||||||||| |||||||||||||| || ||| |  |||| ||||    
T  34571668 aagtatcagaagagtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcaggatttcaagacggatttacgattccaga 34571569  T
Q  157 gtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagagttaccat 256  Q
    |   ||| |||   |||||||| ||||| || ||||| ||| | |||||||||||||||||||| ||| | ||||| |||||||||||||| ||||||||    
T  34571568 gccatgcggttctcgcacttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccat 34571469  T
Q  257 tatgcctaaggatattcaacttgc 280  Q
    ||||||||||||||||||||||||    
T  34571468 tatgcctaaggatattcaacttgc 34571445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 171 - 280
Target Start/End: Complemental strand, 34562760 - 34562651
Alignment:
Q  171 gcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagagttaccattatgcctaaggata 270  Q
    |||||||| ||||| || ||||| ||| | |||||||||||||||||||| ||| | ||||| |||||||||||||| ||||||||||||||||||||||    
T  34562760 gcacttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggata 34562661  T
Q  271 ttcaacttgc 280  Q
    ||||||||||    
T  34562660 ttcaacttgc 34562651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 57 - 280
Target Start/End: Complemental strand, 34579136 - 34578913
Alignment:
Q  57 aagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagatttcaga 156  Q
    |||||||||||| | || || ||| | ||| | ||||||||||||||  |  | ||||||||||| |||||| ||||||| || ||| | ||||| ||||    
T  34579136 aagtatcagaagggtaccgaacttttgattcgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttcaagacagatttgagattccaga 34579037  T
Q  157 gtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagagttaccat 256  Q
    |   ||| |||   |||||||| ||||| |  ||||| ||| | |||||||||||||||||||| ||| | ||||| ||||||||||||||  | ||| |    
T  34579036 gccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgt 34578937  T
Q  257 tatgcctaaggatattcaacttgc 280  Q
    ||||   |||||||||||||||||    
T  34578936 tatggtgaaggatattcaacttgc 34578913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 57 - 280
Target Start/End: Complemental strand, 34584885 - 34584662
Alignment:
Q  57 aagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagatttcaga 156  Q
    |||||||||||| | || || ||| | ||| | ||||||||||||||  |  | ||||||||||| |||||| ||||||| || ||| | ||||| ||||    
T  34584885 aagtatcagaagggtaccgaacttttgattcgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttcaagacagatttgagattccaga 34584786  T
Q  157 gtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagagttaccat 256  Q
    |   ||| |||   |||||||| ||||| |  ||||| ||| | |||||||||||||||||||| ||| | ||||| ||||||||||||||  | ||| |    
T  34584785 gccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgt 34584686  T
Q  257 tatgcctaaggatattcaacttgc 280  Q
    ||||   |||||||||||||||||    
T  34584685 tatggtgaaggatattcaacttgc 34584662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 178; Significance: 6e-96; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 15 - 308
Target Start/End: Complemental strand, 43479938 - 43479645
Alignment:
Q  15 cacagattccgtccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttc 114  Q
    |||||||||||||| ||||| || ||  | || || ||||| |||||||||||||| || ||||||||||| ||||| |||||||||||||||||||||     
T  43479938 cacagattccgtcctggaactgttgctcttcgtgagatccgcaagtatcagaagagtaccgagcttctcatcaggaagcttccattccaaagattggtta 43479839  T
Q  115 gtgaaatcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttga 214  Q
    | |||||||||||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  43479838 gggaaatcgctcaggatttcaaaactgatctcaggttccagagtagcgctgtttctgctcttcaagaagccgctgaagcttatcttgttggtttgtttga 43479739  T
Q  215 ggatacgaatctttgtgctattcatgctaagagagttaccattatgcctaaggatattcaacttgcaagaagaatcagaggcgaaagggcttag 308  Q
     ||||| || ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  43479738 agatactaacctttgcgctattcatgctaagagggttacaattatgcctaaggatattcaacttgcaagaagaattagaggcgagagggcttag 43479645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 51 - 308
Target Start/End: Original strand, 38799395 - 38799652
Alignment:
Q  51 atccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagat 150  Q
    ||||| |||||||||||||||||||||||||||||  | ||||||||||||||| |  | ||||||||||| ||||| |||||||| || ||||| ||||    
T  38799395 atccgtaagtatcagaagagcactgagcttctcatccgtaaacttccattccaacgtcttgttcgtgaaattgctcaagatttcaagacagatctgagat 38799494  T
Q  151 ttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagagt 250  Q
    | ||||| || || ||||| || |||||||||||||||||||| ||  | |||||| | ||||| || || || |||||||| |||||||||||||||||    
T  38799495 tccagagcagcgcagtttccgctcttcaagaagctgctgaagcttacttggttggtctctttgaagacacaaacctttgtgcaattcatgctaagagagt 38799594  T
Q  251 taccattatgcctaaggatattcaacttgcaagaagaatcagaggcgaaagggcttag 308  Q
    ||| || ||||||||||| ||||| |||||||||||||||||||| || |||||||||    
T  38799595 tacaatcatgcctaaggacattcagcttgcaagaagaatcagaggagagagggcttag 38799652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 51 - 308
Target Start/End: Complemental strand, 38822122 - 38821865
Alignment:
Q  51 atccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagat 150  Q
    ||||| |||||||||||||||||||||||||||||  | ||||||||||||||| |  | ||||||||||| ||||| |||||||| || ||||| ||||    
T  38822122 atccgtaagtatcagaagagcactgagcttctcatccgtaaacttccattccaacgtcttgttcgtgaaattgctcaagatttcaagacagatctgagat 38822023  T
Q  151 ttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagagt 250  Q
    | ||||| || || ||||| || |||||||||||||||||||| ||  | |||||| | ||||| || || || |||||||| |||||||||||||||||    
T  38822022 tccagagcagcgcagtttccgctcttcaagaagctgctgaagcttacttggttggtctctttgaagacacaaacctttgtgcaattcatgctaagagagt 38821923  T
Q  251 taccattatgcctaaggatattcaacttgcaagaagaatcagaggcgaaagggcttag 308  Q
    ||| || ||||||||||| ||||| |||||||||||||||||||| || |||||||||    
T  38821922 tacaatcatgcctaaggacattcagcttgcaagaagaatcagaggagagagggcttag 38821865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 51 - 280
Target Start/End: Original strand, 25865600 - 25865829
Alignment:
Q  51 atccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagat 150  Q
    ||||| |||||||||||||| ||||||||| | ||  | || |||||||||||  |  | ||||||||||| ||||||||||||||||| ||||| ||||    
T  25865600 atccgtaagtatcagaagagtactgagcttttgatccgtaagcttccattccagcgtcttgttcgtgaaattgctcaggatttcaaaacggatctgagat 25865699  T
Q  151 ttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagagt 250  Q
    ||||||||  |||||||  ||||||||| ||||||||||| || |||||||| || |||||||||||||| ||| | ||||| |||||||||||||| ||    
T  25865700 ttcagagtcatgctgttcttgcacttcaggaagctgctgaggcttatcttgtgggattgtttgaggatactaatttgtgtgcaattcatgctaagagggt 25865799  T
Q  251 taccattatgcctaaggatattcaacttgc 280  Q
     || |||||||| ||||||||||| |||||    
T  25865800 aacgattatgccaaaggatattcagcttgc 25865829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 27 - 280
Target Start/End: Original strand, 26592044 - 26592297
Alignment:
Q  27 ccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctc 126  Q
    |||||||| |||||| | || || ||||| ||||| ||||||||||| || ||||||||| | |||||||| |||||  |  | |||||||| || ||||    
T  26592044 ccaggaaccgtcgcactccgtgagatccgcaagtaccagaagagcaccgaacttctcattcgcaaacttcctttccagcgtcttgttcgtgagattgctc 26592143  T
Q  127 aggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatct 226  Q
    |||||||||| || |||||| | ||||||||   |||||| || || || |||||||| || || || ||||||||||| |||||||||||||| || ||    
T  26592144 aggatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatcttgttggattgtttgaggatactaacct 26592243  T
Q  227 ttgtgctattcatgctaagagagttaccattatgcctaaggatattcaacttgc 280  Q
     || ||||||||||||||| | ||||| || ||||||||||||||||| |||||    
T  26592244 ctgcgctattcatgctaagcgtgttactatcatgcctaaggatattcagcttgc 26592297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 93 - 281
Target Start/End: Original strand, 41943886 - 41944074
Alignment:
Q  93 cttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaag 192  Q
    |||||||||||| |  | ||||||||||| ||||| |||||||| || ||||||||||| |||||   |||||||  ||||||||| ||||| || ||||    
T  41943886 cttccattccaacgtcttgttcgtgaaattgctcaagatttcaagacggatctcagattccagagccatgctgttcttgcacttcaggaagcagcagaag 41943985  T
Q  193 cgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagagttaccattatgcctaaggatattcaacttgca 281  Q
    | ||||| ||||| |||||||||||||| ||| | ||||| |||||||||||||| ||||| |||||||| ||||| ||||||||||||    
T  41943986 cttatctggttggattgtttgaggataccaatttgtgtgcaattcatgctaagagggttacaattatgccaaaggacattcaacttgca 41944074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 201 - 308
Target Start/End: Original strand, 38807046 - 38807153
Alignment:
Q  201 gttggtttgtttgaggatacgaatctttgtgctattcatgctaagagagttaccattatgcctaaggatattcaacttgcaagaagaatcagaggcgaaa 300  Q
    |||||| | |||||||| || ||||  || || |||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| |    
T  38807046 gttggtctctttgaggacacaaatccgtgcgcaattcatgctaagagagttactatcatgcctaaggacattcaacttgcaagaagaatcagaggcgaga 38807145  T
Q  301 gggcttag 308  Q
    ||||||||    
T  38807146 gggcttag 38807153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 173 - 274
Target Start/End: Original strand, 44343977 - 44344078
Alignment:
Q  173 acttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagagttaccattatgcctaaggatatt 272  Q
    |||||| ||||| ||||| || ||||| || || |||||||||||||| ||| | |||||||||||||||||||| || || |||||||| |||||||||    
T  44343977 acttcaggaagcagctgaggcttatctcgtgggattgtttgaggataccaatttgtgtgctattcatgctaagagggtgacgattatgcccaaggatatt 44344076  T
Q  273 ca 274  Q
    ||    
T  44344077 ca 44344078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 48 - 310
Target Start/End: Original strand, 30909 - 31170
Alignment:
Q  48 gaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctca 147  Q
    |||||||| ||||| |||||||||||||||||||| || || ||||||| ||||||| |  | |||||||||||||||||||||||||||||  ||||||    
T  30909 gaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttc-attccaacgtcttgttcgtgaaatcgctcaggatttcaaaacctatctca 31007  T
Q  148 gatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagag 247  Q
    |||| ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||    
T  31008 gattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagatacaaatctttgcgctattcatgctaagag 31107  T
Q  248 agttaccattatgcctaaggatattcaacttgcaagaagaatcagaggcgaaagggcttagaa 310  Q
    |||||| |||||||||||||||||||||||||||||||||||  | || ||||||||||||||    
T  31108 agttactattatgcctaaggatattcaacttgcaagaagaattcgtggtgaaagggcttagaa 31170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 151; Significance: 8e-80; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 15 - 309
Target Start/End: Original strand, 12531356 - 12531650
Alignment:
Q  15 cacagattccgtccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttc 114  Q
    |||||||||||||||||||| || ||| | || || ||||| ||||| ||||||||||| |||||||| || ||||| ||||||||||| ||  | ||||    
T  12531356 cacagattccgtccaggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttccattccagaggcttgttc 12531455  T
Q  115 gtgaaatcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttga 214  Q
    ||||||||||||| ||||||||||| |||||| |||| || || |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  12531456 gtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttga 12531555  T
Q  215 ggatacgaatctttgtgctattcatgctaagagagttaccattatgcctaaggatattcaacttgcaagaagaatcagaggcgaaagggcttaga 309  Q
     ||||| ||||| ||||| |||||||||||||| ||||| || |||||||||||||||||||| ||  | |||||||||||||| ||||||||||    
T  12531556 agatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttaga 12531650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 15 - 309
Target Start/End: Complemental strand, 12547263 - 12546969
Alignment:
Q  15 cacagattccgtccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttc 114  Q
    |||||||||||||||||||| || ||| | || || ||||| ||||| ||||||||||| |||||||| || ||||| ||||||||||| ||  | ||||    
T  12547263 cacagattccgtccaggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttccattccagaggcttgttc 12547164  T
Q  115 gtgaaatcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttga 214  Q
    ||||||||||||| ||||||||||| |||||| |||| || || |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  12547163 gtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttga 12547064  T
Q  215 ggatacgaatctttgtgctattcatgctaagagagttaccattatgcctaaggatattcaacttgcaagaagaatcagaggcgaaagggcttaga 309  Q
     ||||| ||||| ||||| |||||||||||||| ||||| || |||||||||||||||||||||||  | ||||| |||||||| || |||||||    
T  12547063 agatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaacttgctcgcagaattagaggcgagagagcttaga 12546969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 127 - 309
Target Start/End: Complemental strand, 9866809 - 9866627
Alignment:
Q  127 aggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatct 226  Q
    |||||||||| |||||||| || ||  ||||||||| ||||||||| ||||||||||||||| |||  |||||||||||||||||||| ||||| || ||    
T  9866809 aggatttcaagactgatctgaggttctagagtagtgatgtttctgctcttcaagaagctgctaaagactatcttgttggtttgtttgaagatactaacct 9866710  T
Q  227 ttgtgctattcatgctaagagagttaccattatgcctaaggatattcaacttgcaagaagaatcagaggcgaaagggcttaga 309  Q
    ||||||||||||||||||||||||||| ||||||||| |||| || ||||| ||   ||||||||||||| | ||||||||||    
T  9866709 ttgtgctattcatgctaagagagttactattatgcctgaggacatccaactcgcttaaagaatcagaggccagagggcttaga 9866627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 117 - 309
Target Start/End: Original strand, 9894610 - 9894800
Alignment:
Q  117 gaaatcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgagg 216  Q
    ||||| |||||||||| ||| |||| ||| || || ||||||||||||||||||||  ||||||||| || |||||| | | ||||| |||||||||| |    
T  9894610 gaaattgctcaggatt-caagactggtctgaggttccagagtagtgctgtttctgctgttcaagaagttgttgaagcttgttttgttagtttgtttgaag 9894708  T
Q  217 atacgaatctttgtgctattcatgctaagagagttaccattatgcctaaggatattcaacttgcaagaagaatcagaggcgaaagggcttaga 309  Q
    |||| ||| |||| ||||||||||||||| ||||||| |||||| | ||||||||| |||||||  | |||||||||||||| ||||||||||    
T  9894709 atactaatatttgcgctattcatgctaagtgagttactattatggc-aaggatattgaacttgctcgcagaatcagaggcgagagggcttaga 9894800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 174 - 272
Target Start/End: Original strand, 9870004 - 9870102
Alignment:
Q  174 cttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagagttaccattatgcctaaggatatt 272  Q
    ||||||||||||| |||||| ||| |||||||||||||| | ||||  |||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  9870004 cttcaagaagctgttgaagcttattttgttggtttgttttaagatattaatctttgcgctattcatgctaagagagttactattatgcctaaggatatt 9870102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 162 - 259
Target Start/End: Original strand, 38735528 - 38735625
Alignment:
Q  162 gctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagagttaccattat 259  Q
    ||||||||||| |||||| |||    |||||  |||||||||||||||||||| ||||| || |||||| |||||||||||||||| ||||| |||||    
T  38735528 gctgtttctgctcttcaaaaagtcattgaagtttatcttgttggtttgtttgaagatactaacctttgtactattcatgctaagagggttacaattat 38735625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 309
Target Start/End: Original strand, 9903568 - 9903647
Alignment:
Q  230 tgctattcatgctaagagagttaccattatgcctaaggatattcaacttgcaagaagaatcagaggcgaaagggcttaga 309  Q
    ||||||| ||||||| || ||||| ||||| |||||||||||||||||||| | |||||||  |||||| |||| |||||    
T  9903568 tgctatttatgctaaaagcgttactattatacctaaggatattcaacttgccaaaagaatcgcaggcgagagggtttaga 9903647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 277
Target Start/End: Original strand, 12538675 - 12538724
Alignment:
Q  228 tgtgctattcatgctaagagagttaccattatgcctaaggatattcaact 277  Q
    |||||||||||||||||||||||||| || |||||||| | |||||||||    
T  12538675 tgtgctattcatgctaagagagttactatcatgcctaaaggtattcaact 12538724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 21 - 307
Target Start/End: Original strand, 24860416 - 24860702
Alignment:
Q  21 ttccgtccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaa 120  Q
    |||||||| ||||| || ||| | ||||||||||| ||||| || || ||||| |||||||||||  | ||||||||||||||| |  | ||||||||||    
T  24860416 ttccgtcccggaaccgttgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaa 24860515  T
Q  121 tcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatac 220  Q
    ||||||| ||||||||||| |||||| | || |||||||| ||||||||||| |||||||||||||||||||| ||||| |||||  | ||||| |||||    
T  24860516 tcgctcaagatttcaaaaccgatctccgtttccagagtagcgctgtttctgctcttcaagaagctgctgaagcttatctcgttggactctttgaagatac 24860615  T
Q  221 gaatctttgtgctattcatgctaagagagttaccattatgcctaaggatattcaacttgcaagaagaatcagaggcgaaagggctta 307  Q
     |||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||  | |||||||||||||| ||||||||    
T  24860616 aaatctttgcgctattcatgctaagagagttaccattatgcccaaggatattcaactcgctcgcagaatcagaggcgagagggctta 24860702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 271
Target Start/End: Original strand, 34748655 - 34748875
Alignment:
Q  51 atccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagat 150  Q
    ||||| ||||| ||||||||||| || || |||||  | ||||| || |||||  |  |||||||||| ||||||||||||||||| ||||||||| | |    
T  34748655 atccgtaagtaccagaagagcaccgaactcctcatccgcaaactccccttccagcgtctggttcgtgagatcgctcaggatttcaagactgatctccgtt 34748754  T
Q  151 ttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagagt 250  Q
    | |||||    || || || || || |||||||| ||||| || ||||| |||||| | ||||||||||| || || ||||| |||||||| ||| | ||    
T  34748755 tccagagctccgccgtgtcggcgctgcaagaagcggctgaggcttatctcgttggtctctttgaggatactaacctctgtgccattcatgccaagcgtgt 34748854  T
Q  251 taccattatgcctaaggatat 271  Q
     || || ||||||||||||||    
T  34748855 cactatcatgcctaaggatat 34748875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 247
Target Start/End: Original strand, 53290749 - 53290832
Alignment:
Q  164 tgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagag 247  Q
    ||||||||| |||||| |||  | |||||| |||||||||||||||||||| ||||| || |||||| | ||||||||||||||    
T  53290749 tgtttctgctcttcaaaaagtcgttgaagcttatcttgttggtttgtttgaagatactaacctttgtaccattcatgctaagag 53290832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 44771137 - 44771097
Alignment:
Q  111 gttcgtgaaatcgctcaggatttcaaaactgatctcagatt 151  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  44771137 gttcgtgaaatcgctcaggatttcaaaaccgatctcagatt 44771097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 40035830 - 40035909
Alignment:
Q  57 aagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaa 136  Q
    |||||||||||||| ||||||||  | || ||||| || |||||||| || |||||||||||||| |||||||| |||||    
T  40035830 aagtatcagaagagtactgagctcttgatcaggaagctcccattccagaggttggttcgtgaaattgctcaggacttcaa 40035909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 268
Target Start/End: Original strand, 40036062 - 40036153
Alignment:
Q  177 caagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagagttaccattatgcctaagga 268  Q
    ||||| ||||||||||| |||||||||||| | |||||||| || ||  | |||||||| ||||| ||| ||||||| |||||||| |||||    
T  40036062 caagaggctgctgaagcatatcttgttggtctctttgaggacactaacttgtgtgctatccatgccaagcgagttactattatgcccaagga 40036153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 170 - 280
Target Start/End: Complemental strand, 7594240 - 7594130
Alignment:
Q  170 tgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagagttaccattatgcctaaggat 269  Q
    ||||||||| ||||| ||||| || || || ||||| ||||||||||| || ||||| ||||| |||||||||||||| || || |||||||| ||||||    
T  7594240 tgcacttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaaaggat 7594141  T
Q  270 attcaacttgc 280  Q
    ||||| |||||    
T  7594140 attcagcttgc 7594130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 99 - 208
Target Start/End: Complemental strand, 17769342 - 17769233
Alignment:
Q  99 ttccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatc 198  Q
    ||||||||||| ||| | |||||| |  ||||||||||||| |||||| ||||| |||||||| |||||||||| |||||||||||   || ||| ||||    
T  17769342 ttccaaagatttgttagagaaatcacgaaggatttcaaaacagatctccgattttagagtagtactgtttctgctcttcaagaagccagtgtagcttatc 17769243  T
Q  199 ttgttggttt 208  Q
    ||||||||||    
T  17769242 ttgttggttt 17769233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 208
Target Start/End: Complemental strand, 1539294 - 1539185
Alignment:
Q  99 ttccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatc 198  Q
    ||||||||||| ||| | |||||| |  || |||||||||| |||||| ||||| |||||||| |||||||| | |||||||||||   || ||| ||||    
T  1539294 ttccaaagatttgttagagaaatcacgaagtatttcaaaacagatctccgattttagagtagtactgtttcttctcttcaagaagccagtgtagcttatc 1539195  T
Q  199 ttgttggttt 208  Q
    ||||||||||    
T  1539194 ttgttggttt 1539185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 100 - 208
Target Start/End: Original strand, 27440846 - 27440954
Alignment:
Q  100 tccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatct 199  Q
    |||||||||| ||| | |||||| |  ||||||||||||| |||||| ||||| |||||||   ||||||||| |||||||||||   || ||| |||||    
T  27440846 tccaaagatttgttagagaaatcacgaaggatttcaaaacagatctccgattttagagtagcattgtttctgctcttcaagaagccagtgtagcttatct 27440945  T
Q  200 tgttggttt 208  Q
    |||||||||    
T  27440946 tgttggttt 27440954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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