View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14164_low_20 (Length: 319)

Name: NF14164_low_20
Description: NF14164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14164_low_20
NF14164_low_20
[»] chr8 (4 HSPs)
chr8 (4-319)||(12197848-12198162)
chr8 (4-319)||(12442276-12442590)
chr8 (230-292)||(10248558-10248620)
chr8 (149-214)||(17656927-17656992)
[»] chr1 (9 HSPs)
chr1 (142-214)||(31290937-31291009)
chr1 (148-284)||(27102213-27102348)
chr1 (144-202)||(6583136-6583194)
chr1 (142-203)||(16147660-16147721)
chr1 (142-199)||(16577367-16577424)
chr1 (4-105)||(46768390-46768483)
chr1 (142-205)||(41126393-41126456)
chr1 (229-261)||(10785463-10785495)
chr1 (59-95)||(32882583-32882619)
[»] chr2 (10 HSPs)
chr2 (142-249)||(10173495-10173602)
chr2 (142-216)||(16952300-16952374)
chr2 (142-216)||(17022965-17023039)
chr2 (142-216)||(17060271-17060345)
chr2 (142-205)||(41086715-41086778)
chr2 (142-214)||(1269574-1269647)
chr2 (63-105)||(37770473-37770515)
chr2 (149-202)||(37770567-37770620)
chr2 (142-214)||(7696053-7696125)
chr2 (142-214)||(34230292-34230364)
[»] chr6 (3 HSPs)
chr6 (142-214)||(20701721-20701793)
chr6 (142-214)||(3880516-3880588)
chr6 (59-105)||(3880424-3880470)
[»] chr5 (6 HSPs)
chr5 (142-202)||(8297571-8297631)
chr5 (142-205)||(7195158-7195221)
chr5 (4-104)||(14302217-14302317)
chr5 (159-214)||(14302365-14302420)
chr5 (142-214)||(7391954-7392027)
chr5 (162-214)||(25992098-25992150)
[»] chr4 (14 HSPs)
chr4 (142-214)||(48098424-48098496)
chr4 (146-214)||(41117889-41117957)
chr4 (142-214)||(49528163-49528235)
chr4 (142-216)||(19815138-19815212)
chr4 (59-104)||(39420864-39420909)
chr4 (142-319)||(53823338-53823514)
chr4 (142-214)||(16832939-16833011)
chr4 (59-103)||(48098544-48098588)
chr4 (164-214)||(2061678-2061728)
chr4 (151-205)||(38637160-38637214)
chr4 (60-105)||(16832849-16832893)
chr4 (61-101)||(19673309-19673349)
chr4 (148-213)||(31050583-31050648)
chr4 (142-214)||(25753263-25753335)
[»] chr3 (4 HSPs)
chr3 (142-214)||(14879527-14879599)
chr3 (146-205)||(25647786-25647845)
chr3 (162-214)||(14755202-14755254)
chr3 (61-205)||(23328180-23328329)
[»] scaffold0063 (2 HSPs)
scaffold0063 (142-214)||(58218-58290)
scaffold0063 (60-101)||(58339-58380)
[»] chr7 (6 HSPs)
chr7 (142-214)||(8745244-8745316)
chr7 (142-205)||(24324715-24324778)
chr7 (61-104)||(8745362-8745405)
chr7 (145-216)||(23983296-23983367)
chr7 (236-308)||(1320793-1320864)
chr7 (160-216)||(3478441-3478497)
[»] scaffold0050 (1 HSPs)
scaffold0050 (148-214)||(36800-36866)
[»] scaffold0119 (1 HSPs)
scaffold0119 (142-214)||(42055-42128)
[»] scaffold0200 (1 HSPs)
scaffold0200 (142-319)||(19371-19547)


Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 4 - 319
Target Start/End: Original strand, 12197848 - 12198162
Alignment:
Q  4 aaatacacgtcaccacctacaacagacgccttcatgaacatgaccactnnnnnnncgatatccagcaccacccgtcgtcactactcacccccaaagaaaa 103  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  12197848 aaatacacgtcaccacctacaacagacgccttcatgaacacgaccactaaaaaaacgatatccagcaccacccgtcgtcactactcacccccaaagaaaa 12197947  T
Q  104 aattaaactgccagaactcaacactaaagatgaggcggcacatccgaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgatc 203  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12197948 aattaaactcccagaactcaacactaaagatgaggcggcacatccgaaaagctcatatccgaaagatcattgaacttccatcacctctcgacctccgatc 12198047  T
Q  204 cattgaaagaacatcnnnnnnngctcaaaaccaaacttgagccaaacaacagactcccaattttcaattaaaagtgatcggtcaaccaagacttcatgac 303  Q
    |||||||||||||||       |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  12198048 cattgaaagaacatcaaaaaaagctcaaaaccaaacttgagccaaagaactgactcccaattttcaattaaaagtgatcggtccacc-agacttcatgac 12198146  T
Q  304 caaattagaagagcac 319  Q
    ||||||||||||||||    
T  12198147 caaattagaagagcac 12198162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 4 - 319
Target Start/End: Original strand, 12442276 - 12442590
Alignment:
Q  4 aaatacacgtcaccacctacaacagacgccttcatgaacatgaccactnnnnnnncgatatccagcaccacccgtcgtcactactcacccccaaagaaaa 103  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  12442276 aaatacacgtcaccacctacaacagacgccttcatgaacacgaccactaaaaaaacgatatccagcaccacccgtcgtcactactcacccccaaagaaaa 12442375  T
Q  104 aattaaactgccagaactcaacactaaagatgaggcggcacatccgaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgatc 203  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12442376 aattaaactcccagaactcaacactaaagatgaggcggcacatccgaaaagctcatatccgaaagatcattgaacttccatcacctctcgacctccgatc 12442475  T
Q  204 cattgaaagaacatcnnnnnnngctcaaaaccaaacttgagccaaacaacagactcccaattttcaattaaaagtgatcggtcaaccaagacttcatgac 303  Q
    |||||||||||||||       |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  12442476 cattgaaagaacatcaaaaaaagctcaaaaccaaacttgagccaaagaactgactcccaattttcaattaaaagtgatcggtccacc-agacttcatgac 12442574  T
Q  304 caaattagaagagcac 319  Q
    ||||||||||||||||    
T  12442575 caaattagaagagcac 12442590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 292
Target Start/End: Original strand, 10248558 - 10248620
Alignment:
Q  230 aaaaccaaacttgagccaaacaacagactcccaattttcaattaaaagtgatcggtcaaccaa 292  Q
    |||||||||||||||||||| ||| ||||||| || || ||| |||||||||||||| |||||    
T  10248558 aaaaccaaacttgagccaaagaactgactcccgatcttgaatcaaaagtgatcggtccaccaa 10248620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 17656927 - 17656992
Alignment:
Q  149 gaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgatccattgaaagaa 214  Q
    |||||||||||||  ||||||||||| | |||||| ||||| |||||||||||||||  |||||||    
T  17656927 gaaaagctcctatatgaaagatcattcagcttccaccacctatcgacctccgatccaccgaaagaa 17656992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 31290937 - 31291009
Alignment:
Q  142 cacatccgaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgatccattgaaagaa 214  Q
    |||||||||||||||||||||||||||||||   |||||||| |||||||||||||||||||||  |||||||    
T  31290937 cacatccgaaaagctcctatccgaaagatcaagcaacttccaccacctctcgacctccgatccaccgaaagaa 31291009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 284
Target Start/End: Complemental strand, 27102348 - 27102213
Alignment:
Q  148 cgaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgatccattgaaagaacatcnnnnnnngctcaaaaccaaacttgagcca 247  Q
    ||||| ||||||||| ||||||||||| | |||||| |||||||||||||||||||||  ||||||| | |       || ||||||||||||||| |||    
T  27102348 cgaaacgctcctatctgaaagatcattcagcttccaccacctctcgacctccgatccaccgaaagaa-accgtaaaaagcccaaaaccaaacttgatcca 27102250  T
Q  248 aacaacagactcccaattttcaattaaaagtgatcgg 284  Q
    || ||| ||||||| || |  ||| ||||||||||||    
T  27102249 aagaactgactcccgatctcgaatcaaaagtgatcgg 27102213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 6583136 - 6583194
Alignment:
Q  144 catccgaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgat 202  Q
    ||||||||||||||||||| ||||||||| | | |||||| ||||||||||||||||||    
T  6583136 catccgaaaagctcctatctgaaagatcaatcagcttccaccacctctcgacctccgat 6583194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 16147721 - 16147660
Alignment:
Q  142 cacatccgaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgatc 203  Q
    |||||||||||||||| |||| ||||||||||| ||||| || |||||||| ||||||||||    
T  16147721 cacatccgaaaagctcatatctgaaagatcattcaactttcaccacctctccacctccgatc 16147660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 16577424 - 16577367
Alignment:
Q  142 cacatccgaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctcc 199  Q
    |||||||||||||||||||| | |||||||||| | |||||| |||||||| ||||||    
T  16577424 cacatccgaaaagctcctattccaaagatcattcagcttccaccacctctcaacctcc 16577367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 46768483 - 46768390
Alignment:
Q  4 aaatacacgtcaccacctacaacagacgccttcatgaacatgaccactnnnnnnncgatatccagcaccacccgtcgtcactactcacccccaaagaaaa 103  Q
    |||| |||||||||||||| ||||||| |||||| ||| | ||||||        ||||||||| |||  ||| ||||||||||||||||||||||||||    
T  46768483 aaattcacgtcaccacctaaaacagactccttcacgaaaacgaccac--------cgatatccaacactgcccatcgtcactactcacccccaaagaaaa 46768392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 41126393 - 41126456
Alignment:
Q  142 cacatccgaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgatcca 205  Q
    |||||| ||||||||||||||| ||||||| || | |||||| |||||||| |||||| |||||    
T  41126393 cacatctgaaaagctcctatccaaaagatcgttcagcttccagcacctctcaacctccaatcca 41126456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 261
Target Start/End: Original strand, 10785463 - 10785495
Alignment:
Q  229 caaaaccaaacttgagccaaacaacagactccc 261  Q
    ||||||||||||||||||||||||| |||||||    
T  10785463 caaaaccaaacttgagccaaacaactgactccc 10785495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 32882619 - 32882583
Alignment:
Q  59 cgatatccagcaccacccgtcgtcactactcaccccc 95  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  32882619 cgatatccaacaccacccatcgtcactactcaccccc 32882583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 142 - 249
Target Start/End: Original strand, 10173495 - 10173602
Alignment:
Q  142 cacatccgaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgatccattgaaagaacatcnnnnnnngctcaaaaccaaactt 241  Q
    |||||||||||||||| ||| | |||||||||| |||||||| |||||||||||||||||| ||  ||||||||| |       || |||||||||||||    
T  10173495 cacatccgaaaagctcatattcaaaagatcattcaacttccaccacctctcgacctccgattcaccgaaagaacaccaacaaaagcccaaaaccaaactt 10173594  T
Q  242 gagccaaa 249  Q
    ||||||||    
T  10173595 gagccaaa 10173602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 16952300 - 16952374
Alignment:
Q  142 cacatccgaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgatccattgaaagaaca 216  Q
    |||||||||||||||||||||||||||||| || | |||||| |||||||| ||||||||||||  |||||||||    
T  16952300 cacatccgaaaagctcctatccgaaagatcgtttagcttccaccacctctcaacctccgatccaccgaaagaaca 16952374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 17022965 - 17023039
Alignment:
Q  142 cacatccgaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgatccattgaaagaaca 216  Q
    |||||||||||||||||||||||||||||| || | |||||| |||||||| ||||||||||||  |||||||||    
T  17022965 cacatccgaaaagctcctatccgaaagatcgtttagcttccaccacctctcaacctccgatccaccgaaagaaca 17023039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 17060271 - 17060345
Alignment:
Q  142 cacatccgaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgatccattgaaagaaca 216  Q
    |||||||||||||||||||||||||||||| || | |||||| |||||||| ||||||||||||  |||||||||    
T  17060271 cacatccgaaaagctcctatccgaaagatcgtttagcttccaccacctctcaacctccgatccaccgaaagaaca 17060345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 41086715 - 41086778
Alignment:
Q  142 cacatccgaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgatcca 205  Q
    ||||||| |||||||| |||||||||||||||| | |||||| |||||||||||||||||||||    
T  41086715 cacatccaaaaagctcttatccgaaagatcattcagcttccaccacctctcgacctccgatcca 41086778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 1269647 - 1269574
Alignment:
Q  142 cacatccgaaaagctcctatccgaaa-gatcattgaacttccatcacctctcgacctccgatccattgaaagaa 214  Q
    ||||| |||||||||||||||||||| ||| ||| | |||||| || |||||||||||||||||| ||||||||    
T  1269647 cacattcgaaaagctcctatccgaaaagattattcagcttccaccaactctcgacctccgatccactgaaagaa 1269574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 37770473 - 37770515
Alignment:
Q  63 atccagcaccacccgtcgtcactactcacccccaaagaaaaaa 105  Q
    ||||| ||||||||||||||||||||| |||||||||||||||    
T  37770473 atccaacaccacccgtcgtcactactcgcccccaaagaaaaaa 37770515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 37770567 - 37770620
Alignment:
Q  149 gaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgat 202  Q
    ||||||||| |||| ||||||||||| | |||||| ||||||||||||||||||    
T  37770567 gaaaagctcatatctgaaagatcattcagcttccaacacctctcgacctccgat 37770620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 7696125 - 7696053
Alignment:
Q  142 cacatccgaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgatccattgaaagaa 214  Q
    |||||||  ||| |||||||||||||||||||| | |||||| |||||| |||||| |||||||  |||||||    
T  7696125 cacatcctcaaatctcctatccgaaagatcattcagcttccaccacctcccgaccttcgatccaccgaaagaa 7696053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 34230364 - 34230292
Alignment:
Q  142 cacatccgaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgatccattgaaagaa 214  Q
    |||||| ||||||||| |||  ||||||||||| | |||||| |||||||| ||||||||||||  |||||||    
T  34230364 cacatctgaaaagctcttatttgaaagatcattcagcttccaccacctctcaacctccgatccaccgaaagaa 34230292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 20701721 - 20701793
Alignment:
Q  142 cacatccgaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgatccattgaaagaa 214  Q
    ||||| ||||||||||||||||||||||||||| | ||||||  ||||||||||||||||||||  |||||||    
T  20701721 cacattcgaaaagctcctatccgaaagatcattcagcttccactacctctcgacctccgatccaccgaaagaa 20701793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 3880516 - 3880588
Alignment:
Q  142 cacatccgaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgatccattgaaagaa 214  Q
    ||||||| |||||||| |||||||||||| ||| |||||||| |||| ||||||||||||||||  |||||||    
T  3880516 cacatccaaaaagctcatatccgaaagattattcaacttccaccaccactcgacctccgatccacggaaagaa 3880588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 3880424 - 3880470
Alignment:
Q  59 cgatatccagcaccacccgtcgtcactactcacccccaaagaaaaaa 105  Q
    ||||||||| ||||| | ||||||||||||||||||| |||||||||    
T  3880424 cgatatccaacaccatctgtcgtcactactcaccccctaagaaaaaa 3880470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 8297631 - 8297571
Alignment:
Q  142 cacatccgaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgat 202  Q
    |||||||||||||||||||||||||||| |||| |||||||| |||||| |||||||||||    
T  8297631 cacatccgaaaagctcctatccgaaagaccattcaacttccaccacctcacgacctccgat 8297571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 7195158 - 7195221
Alignment:
Q  142 cacatccgaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgatcca 205  Q
    |||||||| ||||||||||||| |||||| ||| | ||||||  ||||||||||||||||||||    
T  7195158 cacatccgcaaagctcctatccaaaagattattcagcttccacgacctctcgacctccgatcca 7195221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 14302217 - 14302317
Alignment:
Q  4 aaatacacgtcaccacctacaacagacgccttcatgaacatgaccactnnnnnnncgatatccagcaccacccgtcgtcactactcacccccaaagaaaa 103  Q
    ||||||||||||||||||| ||||||  |||||  ||| | ||||| |       ||||||||| ||||||| |||||||||||||| ||||||||||||    
T  14302217 aaatacacgtcaccacctaaaacagattccttcgcgaaaacgaccaatgtaaaaacgatatccaacaccacctgtcgtcactactcatccccaaagaaaa 14302316  T
Q  104 a 104  Q
    |    
T  14302317 a 14302317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 14302365 - 14302420
Alignment:
Q  159 tatccgaaagatcattgaacttccatcacctctcgacctccgatccattgaaagaa 214  Q
    |||||||||||||||  | |||||| |||||||||||||||||||||  |||||||    
T  14302365 tatccgaaagatcatgcagcttccaccacctctcgacctccgatccaccgaaagaa 14302420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 7391954 - 7392027
Alignment:
Q  142 cacatccgaaaagctcctatccga-aagatcattgaacttccatcacctctcgacctccgatccattgaaagaa 214  Q
    |||||||||||||||||||||| | ||||||| |   |||| | |||||||||||||||||||||  |||||||    
T  7391954 cacatccgaaaagctcctatccaataagatcaatccgcttcaaccacctctcgacctccgatccaccgaaagaa 7392027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 25992150 - 25992098
Alignment:
Q  162 ccgaaagatcattgaacttccatcacctctcgacctccgatccattgaaagaa 214  Q
    ||||||||||||| | |||||| || ||| ||||||||||||||| |||||||    
T  25992150 ccgaaagatcattaagcttccaacatctcacgacctccgatccatcgaaagaa 25992098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 48098496 - 48098424
Alignment:
Q  142 cacatccgaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgatccattgaaagaa 214  Q
    ||||||||||||||||||||| |||||||| || | |||||| ||||||||||||| |||||||| |||||||    
T  48098496 cacatccgaaaagctcctatctgaaagatcgttcatcttccaccacctctcgaccttcgatccatcgaaagaa 48098424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 41117889 - 41117957
Alignment:
Q  146 tccgaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgatccattgaaagaa 214  Q
    |||| ||||||||||| |||||||||||| | |||||| |||||||||||||| ||||||| |||||||    
T  41117889 tccgcaaagctcctattcgaaagatcattcagcttccaccacctctcgacctctgatccatcgaaagaa 41117957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 49528235 - 49528163
Alignment:
Q  142 cacatccgaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgatccattgaaagaa 214  Q
    |||||||| |||||| ||||||||||||||||| | |||||| |||||| ||||||||||||||  |||||||    
T  49528235 cacatccgcaaagcttctatccgaaagatcattcatcttccaccacctcccgacctccgatccaccgaaagaa 49528163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 19815138 - 19815212
Alignment:
Q  142 cacatccgaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgatccattgaaagaaca 216  Q
    |||||| |||||| ||||||||||||||||||| | |||||| || ||||||||||||| ||||  |||||||||    
T  19815138 cacatcggaaaagttcctatccgaaagatcatttagcttccaccatctctcgacctccggtccaccgaaagaaca 19815212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 39420864 - 39420909
Alignment:
Q  59 cgatatccagcaccacccgtcgtcactactcacccccaaagaaaaa 104  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||    
T  39420864 cgatatccaacaccacccgtcgtcactactcacacccaaagaaaaa 39420909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 319
Target Start/End: Original strand, 53823338 - 53823514
Alignment:
Q  142 cacatccgaaaagctcctatccgaaa-gatcattgaacttccatcacctctcgacctccgatccattgaaagaacatcnnnnnnngctcaaaaccaaact 240  Q
    ||||||| |||||||||||||| ||| ||||| | |||||||| ||||||||||||| ||||| |  ||||||| | |        | ||||||||||||    
T  53823338 cacatcctaaaagctcctatccaaaaagatcaatcaacttccaccacctctcgaccttcgatcaaccgaaagaa-accataaaaaacccaaaaccaaact 53823436  T
Q  241 tgagccaaacaacagactcccaattttcaattaaaagtgatcggtcaaccaagacttcatgaccaaattagaagagcac 319  Q
    ||||||||| ||| ||||||| || |  ||| ||||||||| |||| ||| |||||| |||||||||| ||||| ||||    
T  53823437 tgagccaaagaactgactcccgatctcgaatcaaaagtgattggtccacc-agactttatgaccaaatcagaagggcac 53823514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 16832939 - 16833011
Alignment:
Q  142 cacatccgaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgatccattgaaagaa 214  Q
    |||||||||||||||| ||||| |||||||||| | |||| ||||||||| ||| ||||| ||| ||||||||    
T  16832939 cacatccgaaaagctcatatcccaaagatcattcagcttcaatcacctcttgacttccgaaccactgaaagaa 16833011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 48098588 - 48098544
Alignment:
Q  59 cgatatccagcaccacccgtcgtcactactcacccccaaagaaaa 103  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||    
T  48098588 cgatatccatcacaacccgtcgtcactactcacccccaaagaaaa 48098544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 2061678 - 2061728
Alignment:
Q  164 gaaagatcattgaacttccatcacctctcgacctccgatccattgaaagaa 214  Q
    ||||||||||| |||||||| |||||||||||||||||||||  |||||||    
T  2061678 gaaagatcattcaacttccaccacctctcgacctccgatccaccgaaagaa 2061728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 205
Target Start/End: Original strand, 38637160 - 38637214
Alignment:
Q  151 aaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgatcca 205  Q
    ||||||| |||| ||||||||||| | |||||| |||||||||||||||||||||    
T  38637160 aaagctcttatctgaaagatcattcagcttccaccacctctcgacctccgatcca 38637214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 16832849 - 16832893
Alignment:
Q  60 gatatccagcaccacccgtcgtcactactcacccccaaagaaaaaa 105  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||    
T  16832849 gatatccaacaccacccgtcgtcactactca-ccccaaagaaaaaa 16832893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 19673349 - 19673309
Alignment:
Q  61 atatccagcaccacccgtcgtcactactcacccccaaagaa 101  Q
    ||||||| ||||| |||||||||||||||||||||||||||    
T  19673349 atatccaacaccatccgtcgtcactactcacccccaaagaa 19673309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 31050583 - 31050648
Alignment:
Q  148 cgaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgatccattgaaaga 213  Q
    ||||||||||||| ||||| || |||  | ||||||  |||||||||||||||||||| |||||||    
T  31050583 cgaaaagctcctaaccgaatgaacatgcagcttccacaacctctcgacctccgatccactgaaaga 31050648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 25753335 - 25753263
Alignment:
Q  142 cacatccgaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgatccattgaaagaa 214  Q
    ||||||| ||||||| || |||||||||||||| | ||||||   ||| |||||||||||||||  |||||||    
T  25753335 cacatccaaaaagcttctctccgaaagatcattcagcttccactgcctatcgacctccgatccaccgaaagaa 25753263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 14879599 - 14879527
Alignment:
Q  142 cacatccgaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgatccattgaaagaa 214  Q
    ||||||||||||||||||||| ||||||||||| | |||||| ||||||||||||||| |||||  |||||||    
T  14879599 cacatccgaaaagctcctatctgaaagatcattaagcttccaccacctctcgacctcctatccaccgaaagaa 14879527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 25647845 - 25647786
Alignment:
Q  146 tccgaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgatcca 205  Q
    |||||||||||| || ||||||||||||| ||||| || |||||||||||||||||||||    
T  25647845 tccgaaaagctcataaccgaaagatcattcaactttcaccacctctcgacctccgatcca 25647786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 14755202 - 14755254
Alignment:
Q  162 ccgaaagatcattgaacttccatcacctctcgacctccgatccattgaaagaa 214  Q
    ||||||||||||| |||||||| || ||||||||||||||||||| |||||||    
T  14755202 ccgaaagatcattcaacttccaccatctctcgacctccgatccatcgaaagaa 14755254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 205
Target Start/End: Original strand, 23328180 - 23328329
Alignment:
Q  61 atatccagcaccacccgtcgtcactactcacccccaaagaa--------aaaattaaactgccagaactcaacactaaagatgaggcggcacatccgaaa 152  Q
    |||||||  ||||||| ||||||||||||||||||||||||        ||||| ||||| |||||  |||||||  ||| |||   | ||||| |||||    
T  23328180 atatccacaaccacccatcgtcactactcacccccaaagaacaccactcaaaataaaactcccagacttcaacacccaagctga---gccacattcgaaa 23328276  T
Q  153 agctcctatccgaaagatcattgaacttccatcacctctcgacctccgatcca 205  Q
    |||||||| ||||| || ||  || ||||||  ||||||||||||||||||||    
T  23328277 agctcctaaccgaatgaacaaggagcttccacaacctctcgacctccgatcca 23328329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 58290 - 58218
Alignment:
Q  142 cacatccgaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgatccattgaaagaa 214  Q
    ||||| |||||||||| |||||||||||| ||| | ||||||||| ||||||||||||||||||  |||||||    
T  58290 cacattcgaaaagctcttatccgaaagataattcagcttccatcatctctcgacctccgatccaccgaaagaa 58218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 58380 - 58339
Alignment:
Q  60 gatatccagcaccacccgtcgtcactactcacccccaaagaa 101  Q
    |||||||| ||| ||||||||||||||||||| |||||||||    
T  58380 gatatccaacactacccgtcgtcactactcacacccaaagaa 58339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 8745316 - 8745244
Alignment:
Q  142 cacatccgaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgatccattgaaagaa 214  Q
    ||||||||||||||||||||| ||||||||||  | ||||||  ||||||||||||||||||||  |||||||    
T  8745316 cacatccgaaaagctcctatctgaaagatcatgcagcttccacaacctctcgacctccgatccaccgaaagaa 8745244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 24324715 - 24324778
Alignment:
Q  142 cacatccgaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgatcca 205  Q
    |||| |||||||||||||| ||||||||||||| | |||||| |||| ||||||||||||||||    
T  24324715 cacagccgaaaagctcctaaccgaaagatcattcagcttccaccacccctcgacctccgatcca 24324778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 8745405 - 8745362
Alignment:
Q  61 atatccagcaccacccgtcgtcactactcacccccaaagaaaaa 104  Q
    ||||||| ||||| || |||||||||||||||||||||||||||    
T  8745405 atatccaacaccatccttcgtcactactcacccccaaagaaaaa 8745362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 23983367 - 23983296
Alignment:
Q  145 atccgaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgatccattgaaagaaca 216  Q
    ||||||||||||| ||| |||||||||||| ||||  || |||||||| ||||||||| ||  |||||||||    
T  23983367 atccgaaaagctcatattcgaaagatcattcaactgtcaccacctctcaacctccgatacaccgaaagaaca 23983296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 308
Target Start/End: Complemental strand, 1320864 - 1320793
Alignment:
Q  236 aaacttgagccaaacaacagactcccaattttcaattaaaagtgatcggtcaaccaagacttcatgaccaaat 308  Q
    |||||||||||||| ||| |||| || ||||| ||| |||||||||||| | ||| |||||| ||||||||||    
T  1320864 aaacttgagccaaagaactgacttccgattttgaatcaaaagtgatcggcccacc-agactttatgaccaaat 1320793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 3478497 - 3478441
Alignment:
Q  160 atccgaaagatcattgaacttccatcacctctcgacctccgatccattgaaagaaca 216  Q
    ||||||||||||||| | |||||  |||||||||| ||||||||||  |||||||||    
T  3478497 atccgaaagatcattcagcttccgccacctctcgatctccgatccaccgaaagaaca 3478441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 36866 - 36800
Alignment:
Q  148 cgaaaagctcctatccgaaagatcattgaacttccatcacctctcgacctccgatccattgaaagaa 214  Q
    ||||||||||||| |||||||| |||| |||||||| ||| |||||||||||||||||  |||||||    
T  36866 cgaaaagctcctaaccgaaagaccattcaacttccaccacatctcgacctccgatccaccgaaagaa 36800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 42055 - 42128
Alignment:
Q  142 cacatccgaaaagctcctatccgaaa-gatcattgaacttccatcacctctcgacctccgatccattgaaagaa 214  Q
    ||||| |||||||||||||||||||| ||| ||| | |||||| || |||||||||||||||||| ||||||||    
T  42055 cacattcgaaaagctcctatccgaaaagattattcagcttccaccaactctcgacctccgatccactgaaagaa 42128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 319
Target Start/End: Complemental strand, 19547 - 19371
Alignment:
Q  142 cacatccgaaaagctcctatccgaaa-gatcattgaacttccatcacctctcgacctccgatccattgaaagaacatcnnnnnnngctcaaaaccaaact 240  Q
    ||||| |||||||||||| ||||||| ||| ||| | |||||| || ||||||||||||||||||  ||||||| | |       || ||||||||||||    
T  19547 cacattcgaaaagctcctgtccgaaaagattattcagcttccaccaactctcgacctccgatccaccgaaagaa-accataaaaagcccaaaaccaaact 19449  T
Q  241 tgagccaaacaacagactcccaattttcaattaaaagtgatcggtcaaccaagacttcatgaccaaattagaagagcac 319  Q
    ||||||||| ||| |||| || || |  ||| |||||||||||| | ||| |||||| | |||||||| ||||| ||||    
T  19448 tgagccaaagaactgacttccgatctcgaatcaaaagtgatcggcccacc-agactttaggaccaaatcagaagggcac 19371  T

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