View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14164_low_22 (Length: 284)

Name: NF14164_low_22
Description: NF14164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14164_low_22
NF14164_low_22
[»] chr3 (10 HSPs)
chr3 (18-196)||(21184150-21184328)
chr3 (18-196)||(51774329-51774507)
chr3 (18-192)||(53142380-53142554)
chr3 (18-192)||(30895084-30895258)
chr3 (18-196)||(49005829-49006007)
chr3 (49-192)||(21171113-21171256)
chr3 (18-182)||(39505211-39505375)
chr3 (18-101)||(15775994-15776077)
chr3 (151-196)||(49082117-49082162)
chr3 (160-196)||(49081608-49081644)
[»] chr7 (6 HSPs)
chr7 (18-192)||(40756442-40756616)
chr7 (18-192)||(28348702-28348876)
chr7 (22-196)||(26405436-26405610)
chr7 (18-182)||(27254692-27254856)
chr7 (18-182)||(27266115-27266279)
chr7 (151-196)||(43655279-43655324)
[»] chr5 (12 HSPs)
chr5 (18-196)||(5898575-5898753)
chr5 (18-192)||(25057782-25057956)
chr5 (18-192)||(27822237-27822411)
chr5 (18-192)||(42825966-42826140)
chr5 (18-192)||(5628952-5629126)
chr5 (18-192)||(20875453-20875627)
chr5 (18-191)||(41555375-41555548)
chr5 (21-182)||(33405218-33405379)
chr5 (18-182)||(2493663-2493826)
chr5 (18-158)||(28470859-28470999)
chr5 (70-158)||(35762762-35762850)
chr5 (18-146)||(377457-377585)
[»] chr2 (9 HSPs)
chr2 (18-192)||(8550010-8550184)
chr2 (18-191)||(4200597-4200770)
chr2 (18-196)||(7086796-7086974)
chr2 (18-182)||(31669455-31669619)
chr2 (18-154)||(8292103-8292239)
chr2 (19-158)||(42533667-42533806)
chr2 (40-156)||(16262312-16262428)
chr2 (105-158)||(28617613-28617666)
chr2 (151-196)||(4199275-4199320)
[»] chr1 (10 HSPs)
chr1 (18-192)||(48350167-48350341)
chr1 (44-192)||(12946667-12946815)
chr1 (18-196)||(14517712-14517890)
chr1 (18-182)||(49914073-49914237)
chr1 (18-152)||(27053786-27053920)
chr1 (105-196)||(36687343-36687434)
chr1 (99-196)||(14517169-14517266)
chr1 (70-155)||(46502120-46502205)
chr1 (43-146)||(45729308-45729411)
chr1 (151-196)||(40289877-40289922)
[»] chr8 (3 HSPs)
chr8 (18-192)||(7827561-7827735)
chr8 (18-182)||(40847237-40847399)
chr8 (83-150)||(33110955-33111022)
[»] chr4 (11 HSPs)
chr4 (18-192)||(43724766-43724940)
chr4 (18-182)||(42606731-42606895)
chr4 (18-182)||(25596997-25597161)
chr4 (18-183)||(43631342-43631507)
chr4 (18-182)||(41294397-41294561)
chr4 (32-182)||(35305957-35306107)
chr4 (18-182)||(2318638-2318795)
chr4 (18-158)||(20214359-20214499)
chr4 (71-158)||(31905873-31905960)
chr4 (67-158)||(31906381-31906472)
chr4 (56-136)||(32047637-32047717)
[»] chr6 (3 HSPs)
chr6 (18-196)||(7690236-7690408)
chr6 (23-144)||(32636020-32636141)
chr6 (23-95)||(32639401-32639473)


Alignment Details
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 21184150 - 21184328
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  21184150 acgaggaggtggtggagaggactccgacaccgagacggtgtgggttgtgtcggcataccggtcatattaggagaaattgtccgagtttaaataatcggta 21184249  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgctgtgttttaatgt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  21184250 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgttgtgttttaatgt 21184328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 51774507 - 51774329
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    |||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  51774507 acgaggaggtggtggagaggactccgacaccgagacaatgtgggttgtgtcggcataccgatcatattaggagaaattgtccgagtataaataatcggta 51774408  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgctgtgttttaatgt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  51774407 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgttgtgttttaatgt 51774329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 53142380 - 53142554
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  53142380 acgaggaggtggtggagaggactccaacaccgagacggtgtgggttgtgtcggcataccggtcatattaggagaaattgtccgagtttaaataatcggta 53142479  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgctgtgtttta 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  53142480 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgttgtgtttta 53142554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 30895084 - 30895258
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    ||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  30895084 acgaggaggtggtggagaggactccaacgccgagacggtgtgggttgtgtcggcataccggtcatattaggagaaattgtccgagtttaaataatcggta 30895183  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgctgtgtttta 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30895184 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgttgtgtttta 30895258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 49005829 - 49006007
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||    
T  49005829 acgaggtggtggtggagaggactccgacaccgagacagtgtgggttgtgtcggcataccggtcatattaggagaaattgtccgagtataaataatcggta 49005928  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgctgtgttttaatgt 196  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  49005929 attaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattattttttgtgttttaatgt 49006007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 49 - 192
Target Start/End: Complemental strand, 21171256 - 21171113
Alignment:
Q  49 gagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggtagttaataacgttatgtattatgtgttcaaat 148  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21171256 gagacggtgtgggttgtgtcggcataccggtcatattaggagaaattgtccgagtttaaataatcggtagttaataacgttatgtattatgtgttcaaat 21171157  T
Q  149 aaattaatatatttttatctatcattattatttgctgtgtttta 192  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  21171156 aaattaatatatttttatctatcattattatttgttgtgtttta 21171113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 39505375 - 39505211
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    |||||||| |||| ||||||||| |||||  ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||| |||||    
T  39505375 acgaggagttggtagagaggacttcgacatcgagacagtgtgggttgtgtcggcataccggtcatattaggagaaattgtccgagtataaataaccggta 39505276  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttg 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39505275 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatttatcattattatttg 39505211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 15776077 - 15775994
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccga 101  Q
    ||||||||||||   | ||||| ||||||| ||||  ||||||||||||||||||| |||  |||||||||||||||| |||||    
T  15776077 acgaggaggtggaaaaaaggacaccgacaccgagattgtgtgggttgtgtcggcatcccggccatattaggagaaattgtccga 15775994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 49082117 - 49082162
Alignment:
Q  151 attaatatatttttatctatcattattatttgctgtgttttaatgt 196  Q
    |||| ||||||||||| ||||||||||||||| |||||||||||||    
T  49082117 attactatatttttatttatcattattatttgttgtgttttaatgt 49082162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 49081644 - 49081608
Alignment:
Q  160 tttttatctatcattattatttgctgtgttttaatgt 196  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  49081644 tttttatttatcattattatttgttgtgttttaatgt 49081608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 40756442 - 40756616
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  40756442 acgaggaggtggtggagaggactccgacaccgagacggtgtgggttgtgtcggcataccggtcatattaggagaaattgtccgagtttaaataatcggta 40756541  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgctgtgtttta 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40756542 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgttgtgtttta 40756616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 28348702 - 28348876
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||    
T  28348702 acgaggaggtggtggagaggactccgacaccgagacggtgtgggttgtgtcggcataccggtcatatcaggagaaattgtccgagtttaaataatcggta 28348801  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgctgtgtttta 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28348802 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgttgtgtttta 28348876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 22 - 196
Target Start/End: Original strand, 26405436 - 26405610
Alignment:
Q  22 ggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggtagtta 121  Q
    |||||||||||||||||||||||||| |||||  | |||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||| ||||    
T  26405436 ggaggtggtggagaggactccgacaccgagacaatttgggttgtgtcggcataccggtcatattaggagaaattgtccgagtataaataatcggtggtta 26405535  T
Q  122 ataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgctgtgttttaatgt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||    
T  26405536 ataacgttatgtattatgtgttcaaataaattaatatatttttatctattattattatttgtcgtgttttaatgt 26405610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 27254692 - 27254856
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    ||||||||||||| |||| ||||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||| ||||||| ||||||| |||||    
T  27254692 acgaggaggtggtagagatgactccgacaccgagacagtgtgggttgtgtcagcataccggtcatattaggagaaattgtccgagtataaataaccggta 27254791  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttg 182  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  27254792 gttaataacattatgtattatgtgttcaaataaattaatatgtttttatttatcattattatttg 27254856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 27266115 - 27266279
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    ||||||||||||| |||| ||||||||||| ||||| |||||||||||||| | |||||| ||||||||||||||||| ||||||| ||||||| |||||    
T  27266115 acgaggaggtggtagagatgactccgacaccgagacagtgtgggttgtgtcagtataccggtcatattaggagaaattgtccgagtataaataaccggta 27266214  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttg 182  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  27266215 gttaataacattatgtattatgtgttcaaataaattaatatgtttttatttatcattattatttg 27266279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 43655279 - 43655324
Alignment:
Q  151 attaatatatttttatctatcattattatttgctgtgttttaatgt 196  Q
    |||| ||||||||||||||||||||||||||| ||||||| |||||    
T  43655279 attactatatttttatctatcattattatttgttgtgtttaaatgt 43655324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 5898575 - 5898753
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  5898575 acgaggaggtggtggagaggactccgacaccgagacggtgtgggttgtgtcggcataccggtcatattaggagaaattgtccgagtttaaataatcggta 5898674  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgctgtgttttaatgt 196  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5898675 gttaataatgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgttgtgttttaatgt 5898753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 25057956 - 25057782
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  25057956 acgaggaggtggtggagaggactccgacaccgagacggtgtgggttgtgtcggcataccggtcatattaggagaaattgtccgagtttaaataatcggta 25057857  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgctgtgtttta 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25057856 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgttgtgtttta 25057782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 27822237 - 27822411
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  27822237 acgaggaggtggtggagaggactccgacaccgagacggtgtgggttgtgtcggcataccggtcatattaggagaaattgtccgagtttaaataatcggta 27822336  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgctgtgtttta 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27822337 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgttgtgtttta 27822411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 42826140 - 42825966
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  42826140 acgaggaggtggtggagaggactccgacaccgagacggtgtgggttgtgtcggcataccggtcatattaggagaaattgtccgagtttaaataatcggta 42826041  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgctgtgtttta 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42826040 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgttgtgtttta 42825966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 5628952 - 5629126
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  5628952 acgaggaggtggtggagaggactccaacaccgagacggtgtgggttgtgtcggcataccggtcatattaggagaaattgtccgagtttaaataatcggta 5629051  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgctgtgtttta 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5629052 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgttgtgtttta 5629126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 20875627 - 20875453
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  20875627 acgaggaggtggtggagaggactccgacaccgagacggtgtgggttgtgtcggcataccggtcatattaggagaaattgtccgagtttaaataatcggta 20875528  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgctgtgtttta 192  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||    
T  20875527 gttaataatgttatgtattatgtgttcaaataaattaatatatttttttctatcatcattatttgttgtgtttta 20875453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 41555548 - 41555375
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||    
T  41555548 acgaggaggtggtggagaggactccgacaccgagacggtgtgggttgtgtcggcataccggtcatattaggagaaattgtccgagtttaaataatcgata 41555449  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgctgtgtttt 191  Q
    ||||||||| || | ||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||    
T  41555448 gttaataactttgtctattatgtgttcacataaattaatatatttttatctatcattcttatttgttgtgtttt 41555375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 21 - 182
Target Start/End: Complemental strand, 33405379 - 33405218
Alignment:
Q  21 aggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggtagtt 120  Q
    |||||||||| |||||||||||||||| || || |||||| |||||||||||||||| ||||||||||||||||| ||||||| ||||||| ||||||||    
T  33405379 aggaggtggtagagaggactccgacaccgaaacagtgtggtttgtgtcggcataccggtcatattaggagaaattgtccgagtataaataaccggtagtt 33405280  T
Q  121 aataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttg 182  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||    
T  33405279 aataacgttatgtattatgtgttcaaataaattactatgtttttatttatcattattatttg 33405218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 2493826 - 2493663
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    ||||||||||||| ||||||||||||| || ||||| |||| |||||||||||||||| | |||||||| |||||||| ||||||| ||||||| |||||    
T  2493826 acgaggaggtggtagagaggactccgataccgagacagtgttggttgtgtcggcatacgg-tcatattaagagaaattgtccgagtataaataaccggta 2493728  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttg 182  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||| ||| |||||||||||    
T  2493727 gttaataacgttatgtattatgtgttcaaataaattaatatgattttatttattattattatttg 2493663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 28470999 - 28470859
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    |||| |||||||| |||||||||||||||| |||||  |||||||||||||||||||||| ||||||||||| ||||| ||| ||  |||||||  | ||    
T  28470999 acgatgaggtggtagagaggactccgacaccgagacaatgtgggttgtgtcggcataccggtcatattaggaaaaattgtccaagcataaataactgata 28470900  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatat 158  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  28470899 gttaataacgttatgtattatgagttcaaataaattaatat 28470859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 70 - 158
Target Start/End: Original strand, 35762762 - 35762850
Alignment:
Q  70 gcataccgatcatattaggagaaattatccgagtttaaataatcggtagttaataacgttatgtattatgtgttcaaataaattaatat 158  Q
    |||||||| ||||| ||||||||||| ||||||| |||||||  | |||||||||||||||||||||||||||||||||||||||||||    
T  35762762 gcataccggtcatagtaggagaaattgtccgagtataaataacagatagttaataacgttatgtattatgtgttcaaataaattaatat 35762850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 377585 - 377457
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    ||||||||||||  || || || ||||||| ||||| ||||||||||||||||||| | | ||||||||||||||||| |||||   |  | ||||||||    
T  377585 acgaggaggtggaagaaagaacaccgacaccgagaccgtgtgggttgtgtcggcatcctggtcatattaggagaaattgtccgaccattcaaaatcggta 377486  T
Q  118 gttaataacgttatgtattatgtgttcaa 146  Q
    |||||||  ||||||||||||||||||||    
T  377485 gttaatatagttatgtattatgtgttcaa 377457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 8550010 - 8550184
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  8550010 acgaggaggtggtggagaggactccgacaccaagacggtgtgggttgtgtcggcataccggtcatattaggagaaattgtccgagtttaaataatcggta 8550109  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgctgtgtttta 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8550110 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgttgtgtttta 8550184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 4200597 - 4200770
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||  ||||||||||||||||| ||||||| |||||||||||||    
T  4200597 acgaggaggtggtggagaggactccgacaccgagacagtgtgggttgtgtcggcataccagtcatattaggagaaattgtccgagtataaataatcggta 4200696  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgctgtgtttt 191  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4200697 gttaataacgttgtgtattatgtgttcaaataaattaatatatttttatctatcattattatttgttgtgtttt 4200770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 7086974 - 7086796
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    ||||||||||||| || ||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||| ||||||| ||||||| |||||    
T  7086974 acgaggaggtggtagataggactccgacaccgagacagtgtgggttgtgtctgcataccggtcatattaggagaaattgtccgagtataaataaccggta 7086875  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgctgtgttttaatgt 196  Q
    |||||||||||| |||||||||||||||||||||||| ||| ||||||| ||||||||||||||| |||||||||||||    
T  7086874 gttaataacgttttgtattatgtgttcaaataaattactatgtttttatttatcattattatttgttgtgttttaatgt 7086796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 31669455 - 31669619
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    ||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||   |||    
T  31669455 acgaggaggtggtagagaggactccgacaccgagacagtgtgggttgtgtcggcataccgatcatattagaagaaattgtccgagtataaataactagta 31669554  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttg 182  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  31669555 gttaataactttatgtattatgtgttcaaataaattaatatgtttttatttatcattattatttg 31669619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 8292103 - 8292239
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    ||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| | ||||||| ||||||| |||||    
T  8292103 acgaggaggtggtagagaggactccgacaccgagacagtgtgggttgtgtcggcataccggtcatattaggagaaactgtccgagtataaataaccggta 8292202  T
Q  118 gttaataacgttatgtattatgtgttcaaataaatta 154  Q
    |||||||||||||||||||||||||||||||||||||    
T  8292203 gttaataacgttatgtattatgtgttcaaataaatta 8292239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 42533806 - 42533667
Alignment:
Q  19 cgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggtag 118  Q
    |||||||||||| | ||||| |||||||| ||||| ||||| |||||||||||||| || |||||||| |||||||| ||||||| |||||||  |||||    
T  42533806 cgaggaggtggtagtgaggattccgacaccgagacagtgtgtgttgtgtcggcataacggtcatattatgagaaattgtccgagtataaataactggtag 42533707  T
Q  119 ttaataacgttatgtattatgtgttcaaataaattaatat 158  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  42533706 ttaataacgttatgtattatgtgttcaaataaattaatat 42533667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 40 - 156
Target Start/End: Original strand, 16262312 - 16262428
Alignment:
Q  40 tccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggtagttaataacgttatgtattatg 139  Q
    |||||||| |||||| ||||| ||||||||||||||   ||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||| ||    
T  16262312 tccgacaccgagacgatgtggattgtgtcggcatactagtcatattaggagaaattttccgagtataaataatcggtagttaataatgttatgtattgtg 16262411  T
Q  140 tgttcaaataaattaat 156  Q
    |||||||||||||||||    
T  16262412 tgttcaaataaattaat 16262428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 28617613 - 28617666
Alignment:
Q  105 taaataatcggtagttaataacgttatgtattatgtgttcaaataaattaatat 158  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  28617613 taaataatcggtagttaataatgttatgtattatgtgttcaaataagttaatat 28617666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 4199320 - 4199275
Alignment:
Q  151 attaatatatttttatctatcattattatttgctgtgttttaatgt 196  Q
    |||| ||||||||||||||||||||||||||| ||||||| |||||    
T  4199320 attactatatttttatctatcattattatttgttgtgtttaaatgt 4199275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 48350167 - 48350341
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  48350167 acgaggaggtggtggagaggactccaacaccgagacggtgtgggttgtgtcggcataccggtcatattaggagaaattgtccgagtttaaataatcggta 48350266  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgctgtgtttta 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  48350267 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgttgtgtttta 48350341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 44 - 192
Target Start/End: Complemental strand, 12946815 - 12946667
Alignment:
Q  44 acactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggtagttaataacgttatgtattatgtgtt 143  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12946815 acaccgagacggtgtgggttgtgtcggcataccggtcatattaggagaaattgtccgagtttaaataatcggtagttaataacgttatgtattatgtgtt 12946716  T
Q  144 caaataaattaatatatttttatctatcattattatttgctgtgtttta 192  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12946715 caaataaattaatatatttttatctatcattattatttgttgtgtttta 12946667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 14517712 - 14517890
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    ||||||||||||| || |||||| |||||  ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||    
T  14517712 acgaggaggtggtagaaaggacttcgacaacgagacagtgtgggttgtgtcggcataccggtcatattaggagaaattgtccgagtataaataatcggta 14517811  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgctgtgttttaatgt 196  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||    
T  14517812 gttaataacgttatgtattatgtgttcaaataaattaatatgtttttatttatcattattatttgttgtgttttaatgt 14517890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 49914073 - 49914237
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    ||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||| || ||    
T  49914073 acgaggaggtggtagagaggactccgacaccgagacagtgtgggttgtgtcggcataccggtcatattaggagaaattgtccgagtataaataaccgata 49914172  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttg 182  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  49914173 gttaataacattatgtattatgtgttcaaataaattaatatgtttttatttatcattattatttg 49914237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 27053786 - 27053920
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    ||||||||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||| |||| |||||||||||| ||||||| |||||||||| ||    
T  27053786 acgaggaggtggtagagaggactccaacaccgagacagtgtgggttgtgtcggcataccggtcattttaggagaaattgtccgagtataaataatcgata 27053885  T
Q  118 gttaataacgttatgtattatgtgttcaaataaat 152  Q
    ||||||||||||||||| |||||||||||||||||    
T  27053886 gttaataacgttatgtactatgtgttcaaataaat 27053920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 36687434 - 36687343
Alignment:
Q  105 taaataatcggtagttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgctgtgttttaatgt 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||    
T  36687434 taaataatcggtagttaataacgttatgtattatgtgttcaaataaattaatatgtttttatttatcattattatttgttgtgttttaatgt 36687343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 99 - 196
Target Start/End: Complemental strand, 14517266 - 14517169
Alignment:
Q  99 cgagtttaaataatcggtagttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgctgtgttttaatgt 196  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||| ||||||| |||||    
T  14517266 cgagtataaataatcggtagttaataacgttatgtattatgtgttcaaataaattaatacgtttttatttatcattattatttgttgtgtttaaatgt 14517169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 46502205 - 46502120
Alignment:
Q  70 gcataccgatcatattaggagaaattatccgagtttaaataatcggtagttaataacgttatgtattatgtgttcaaataaattaa 155  Q
    |||||||| ||||| ||||||||||| ||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  46502205 gcataccggtcatagtaggagaaattgtccgagtataaataaccgatagttaataacgttatgtattatgtgttcaaataaattaa 46502120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 45729308 - 45729411
Alignment:
Q  43 gacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggtagttaataacgttatgtattatgtgt 142  Q
    ||||| ||||| ||||||||||||||||||| ||| |||||| |||||||||| ||| |     || || || ||||||||| |||||||||||||||||    
T  45729308 gacaccgagactgtgtgggttgtgtcggcatcccggtcatatcaggagaaattgtccaaccaataaaaaacgctagttaatatcgttatgtattatgtgt 45729407  T
Q  143 tcaa 146  Q
    ||||    
T  45729408 tcaa 45729411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 40289922 - 40289877
Alignment:
Q  151 attaatatatttttatctatcattattatttgctgtgttttaatgt 196  Q
    |||| ||||||||||| ||||||||||||||| |||||||||||||    
T  40289922 attactatatttttatttatcattattatttgttgtgttttaatgt 40289877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 151; Significance: 6e-80; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 7827735 - 7827561
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  7827735 acgaggaggtggtggagaggactccgacaccgagacggtgtgggttgtgtcggcataccggtcatattaggagaaattgtccgagtttaaataatcggta 7827636  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgctgtgtttta 192  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  7827635 gttaataatgttatgtattatgtgttcaaataaattaatatatttttttctatcattattatttgttgtgtttta 7827561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 40847237 - 40847399
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    ||||||||||||| |||||||||| ||||||||||| |||  |||||||||||||||||| ||||||||||||||||| ||||||| ||||||| |||||    
T  40847237 acgaggaggtggtagagaggactctgacactgagacagtg--ggttgtgtcggcataccggtcatattaggagaaattgtccgagtataaataaccggta 40847334  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttg 182  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||    
T  40847335 gttaataacgttatgtattatgtgttcaaataaattactatgtttttatttatcattattatttg 40847399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 83 - 150
Target Start/End: Complemental strand, 33111022 - 33110955
Alignment:
Q  83 attaggagaaattatccgagtttaaataatcggtagttaataacgttatgtattatgtgttcaaataa 150  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  33111022 attaggagaaattgtccgagtataaataatcggtagttaataacgttatgtattatgtgtttaaataa 33110955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 151; Significance: 6e-80; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 43724766 - 43724940
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    ||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  43724766 acgaggaggtggtggagaggactccaacgccgagacggtgtgggttgtgtcggcataccggtcatattaggagaaattgtccgagtttaaataatcggta 43724865  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgctgtgtttta 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  43724866 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgttgtgtttta 43724940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 42606731 - 42606895
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    ||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| || |||| ||||||| |||||    
T  42606731 acgaggaggtggtagagaggactccgacaccgagacagtgtgggttgtgtcggcataccggtcatattaggagaaattgtctgagtataaataaccggta 42606830  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttg 182  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||    
T  42606831 gttaataacgttatgtattatgtgttcaaataaattactatgtttttatttatcattattatttg 42606895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 25596997 - 25597161
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    ||||||||||||| ||||||||||| |||| ||||| |||||||||||||||||||| || ||||||||||||||||| ||||||| ||||||| |||||    
T  25596997 acgaggaggtggtagagaggactccaacaccgagacagtgtgggttgtgtcggcatatcggtcatattaggagaaattgtccgagtataaataaccggta 25597096  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttg 182  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  25597097 gttaataacattatgtattatgtgttcaaataaattaatatgtttttatttatcattattatttg 25597161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 43631507 - 43631342
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    ||||||||||||| ||||||||| ||| || ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||| |||||    
T  43631507 acgaggaggtggtagagaggacttcgataccgagacagtgtgggttgtgtcggcataccggtcatattaggagaaattgtccgagtataaataaccggta 43631408  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgc 183  Q
    ||||||||| ||||||||||||| ||||||||||||||||| ||||||| ||||||||| ||||||    
T  43631407 gttaataacattatgtattatgtattcaaataaattaatatgtttttatttatcattatcatttgc 43631342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 41294561 - 41294397
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    |||||||||| || |||||||||||||||  ||||| ||||||||||||||||||||||| |||||||| |||||||| ||||||| |||||||  ||||    
T  41294561 acgaggaggttgtagagaggactccgacatcgagacagtgtgggttgtgtcggcataccggtcatattaagagaaattgtccgagtataaataactggta 41294462  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttg 182  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||    
T  41294461 gttaataacgttatgtattatgtgttcaaataaattaatatgtttttatttattattattatttg 41294397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 32 - 182
Target Start/End: Complemental strand, 35306107 - 35305957
Alignment:
Q  32 gagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggtagttaataacgttat 131  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||| |||||||| ||||||| |||| ||||||||||||||||||||||    
T  35306107 gagaggactccgacaccgagacagtgtgtgttgtgtcggcataccggtcatattatgagaaattgtccgagtataaaaaatcggtagttaataacgttat 35306008  T
Q  132 gtattatgtgttcaaataaattaatatatttttatctatcattattatttg 182  Q
    |||||||||||| |||||||||| ||| ||||||| |||||||||||||||    
T  35306007 gtattatgtgtttaaataaattactatgtttttatttatcattattatttg 35305957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 2318638 - 2318795
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    ||||||||||||| |||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||| |||||    
T  2318638 acgaggaggtggtagagaggactctgacaccgagacagtgtgggttgtgtcggcataccggtcatattaggagaaattgtccgagtataaataaccggta 2318737  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttg 182  Q
    |||||||||       ||||||||||||||||||||||||| |||| || |||||||||||||||    
T  2318738 gttaataac-------attatgtgttcaaataaattaatatgttttaatttatcattattatttg 2318795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 20214499 - 20214359
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    ||||||||||||| ||||||||| |||| | |||||  |||||||||||||| ||||||||||||||||| | ||||| |||| || |||||||  ||||    
T  20214499 acgaggaggtggtagagaggacttcgacgccgagacaatgtgggttgtgtcgacataccgatcatattagaaaaaattgtccgtgtataaataactggta 20214400  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatat 158  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  20214399 gttaataacgttatgtattatgtgttcaattaaattaatat 20214359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 71 - 158
Target Start/End: Complemental strand, 31905960 - 31905873
Alignment:
Q  71 cataccgatcatattaggagaaattatccgagtttaaataatcggtagttaataacgttatgtattatgtgttcaaataaattaatat 158  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  31905960 cataccggtcatattaggagaaactatccgagtataaataatcggtagttaataacgtgatgtattatgtgttcaaataaattaatat 31905873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 67 - 158
Target Start/End: Original strand, 31906381 - 31906472
Alignment:
Q  67 tcggcataccgatcatattaggagaaattatccgagtttaaataatcggtagttaataacgttatgtattatgtgttcaaataaattaatat 158  Q
    ||||||||||| ||||||||||||||| | ||||| | |||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  31906381 tcggcataccggtcatattaggagaaactgtccgaatataaataatcggtagttaataacgtgatgtattatgtgttaaaataaattaatat 31906472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 136
Target Start/End: Original strand, 32047637 - 32047717
Alignment:
Q  56 tgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggtagttaataacgttatgtatt 136  Q
    |||||||| ||||||||| || |||||||||||||||||| ||||||  |||||||  | ||||||||  | |||||||||    
T  32047637 tgtgggttatgtcggcatcccaatcatattaggagaaattgtccgagcataaataactgatagttaatttctttatgtatt 32047717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 8e-64; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 7690236 - 7690408
Alignment:
Q  18 acgaggaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggta 117  Q
    ||||||||||||||||||||||||||||||        |||||||||||||||||||||| ||||||||| ||||||| ||||||| |||||||||||||    
T  7690236 acgaggaggtggtggagaggactccgacacat------tgtgggttgtgtcggcataccggtcatattagaagaaattgtccgagtataaataatcggta 7690329  T
Q  118 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattattatttgctgtgttttaatgt 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  7690330 gttaataacgttatgtattatgtgttcaaataaattaatatatttttatctatcattaatatttgttgtgttttaatgt 7690408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 144
Target Start/End: Complemental strand, 32636141 - 32636020
Alignment:
Q  23 gaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaattatccgagtttaaataatcggtagttaa 122  Q
    |||| |||||| ||||| ||||||| ||||  |||| |||||||||||||| || |||| |||||||||||||  ||||   ||||||| ||||| ||||    
T  32636141 gaggaggtggaaaggacaccgacaccgagattgtgtaggttgtgtcggcatcccaatcacattaggagaaatttcccgatcataaataaccggtaattaa 32636042  T
Q  123 taacgttatgtattatgtgttc 144  Q
    || | ||| ||||||| |||||    
T  32636041 tatcattacgtattatatgttc 32636020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 32639401 - 32639473
Alignment:
Q  23 gaggtggtggagaggactccgacactgagacggtgtgggttgtgtcggcataccgatcatattaggagaaatt 95  Q
    |||| |||||| ||||| ||||||| ||||| ||||||||||| ||  ||| || ||||||||||||||||||    
T  32639401 gaggaggtggaaaggacaccgacaccgagaccgtgtgggttgtatcaacatcccaatcatattaggagaaatt 32639473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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