View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14164_low_24 (Length: 274)
Name: NF14164_low_24
Description: NF14164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14164_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 36565499 - 36565321
Alignment:
| Q |
17 |
agatagataggtagagaaacataaggagataggtggattgcctnnnnnnnnggaaatggagtagatggtcaaatttgagagtgaaaggaactttacaatg |
116 |
Q |
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| T |
36565499 |
agatagacaggtagagaaacataaggagataggtggattgcctaaaaaaaaggaaatggagtagatggtcaaatttgagagtgaaaggaactttacaatg |
36565400 |
T |
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| Q |
117 |
aaaccattggttcactattttattgagtttcaaaatgccaataattgtgtcaaacgaaggatttggatcctctcatgtt |
195 |
Q |
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| T |
36565399 |
aaaccattggttcactattttattgagtttcaaaatgctaataattgtgtcaaactaaggatttggatcctctcatgtt |
36565321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 243
Target Start/End: Complemental strand, 36565317 - 36565287
Alignment:
| Q |
213 |
catcctgccataatcttaaccattcattaac |
243 |
Q |
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| T |
36565317 |
catcctgccataatcttaaccattcattaac |
36565287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 13240427 - 13240359
Alignment:
| Q |
175 |
ggatttggatcctctcatgttcattctctcatgttgtccatcctgccataatcttaaccattcattaac |
243 |
Q |
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| T |
13240427 |
ggatttggatcctctcacgcttattctctcatgttgtctatcctgccttaatcttagccattcattaac |
13240359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 32854629 - 32854695
Alignment:
| Q |
177 |
atttggatcctctcatgttcattctctcatgttgtccatcctgccataatcttaaccattcattaac |
243 |
Q |
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| T |
32854629 |
atttggatcctctcatgctatttctctcatgttgtccatcctgcctcgatctcaaccattcattaac |
32854695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 50324963 - 50324895
Alignment:
| Q |
175 |
ggatttggatcctctcatgttcattctctcatgttgtccatcctgccataatcttaaccattcattaac |
243 |
Q |
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|||||| |||| | ||||||||||||||| |||||||||||||||| |||||| | |||||||||||| |
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| T |
50324963 |
ggattttgatcatttcatgttcattctcttttgttgtccatcctgccttaatctcagccattcattaac |
50324895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 42889216 - 42889286
Alignment:
| Q |
175 |
ggatttggatcctctcatgttcattctctcatgttgt--ccatcctgccataatcttaaccattcattaac |
243 |
Q |
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||||||||||||||||||| | ||||||||||||||| |||| ||| | ||||||||||||||||||| |
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| T |
42889216 |
ggatttggatcctctcatgctaattctctcatgttgttctcatcgagccttgatcttaaccattcattaac |
42889286 |
T |
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