View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14164_low_25 (Length: 270)
Name: NF14164_low_25
Description: NF14164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14164_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 21 - 254
Target Start/End: Complemental strand, 12198425 - 12198189
Alignment:
| Q |
21 |
gtccattctccacttgttactcatcaacgctgcgatgtaattgttttgataaaatctgtaagctgatannnnnnnn---ggtgtaagctgatttcataag |
117 |
Q |
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| T |
12198425 |
gtccattctccacttgttactcatcaatgctgcgatgtaattgttttgataaaatctgtaagctgatttttttttttttgttgtaagctgatttcataag |
12198326 |
T |
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| Q |
118 |
tcaaacttttatacaactcaattcaccattaaactaatattcaatacaaattcatgattatttatccaagagctcttagatgagaatgagatgacaccta |
217 |
Q |
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| T |
12198325 |
tcaaacttttatacaactcaattcaccattaaactaatattcaatacaaattcatgattatttatccaagagctcttagataagaatgagatgacaccta |
12198226 |
T |
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| Q |
218 |
gctacaatcttgtttggtttgatatcatgtttctctg |
254 |
Q |
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| T |
12198225 |
gctgcaatcttgtttggtttgatattgtgtttctctg |
12198189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 21 - 254
Target Start/End: Complemental strand, 12442853 - 12442617
Alignment:
| Q |
21 |
gtccattctccacttgttactcatcaacgctgcgatgtaattgttttgataaaatctgtaagctgatannnnnnnn---ggtgtaagctgatttcataag |
117 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
12442853 |
gtccattctccacttgttactcatcaatgctgcgatgtaattgttttgataaaatctgtaagctgatttttttttttttgttgtaagctgatttcataag |
12442754 |
T |
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| Q |
118 |
tcaaacttttatacaactcaattcaccattaaactaatattcaatacaaattcatgattatttatccaagagctcttagatgagaatgagatgacaccta |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
12442753 |
tcaaacttttatacaactcaattcaccattaaactaatattcaatacaaattcatgattatttatccaagagctcttagataagaatgagatgacaccta |
12442654 |
T |
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| Q |
218 |
gctacaatcttgtttggtttgatatcatgtttctctg |
254 |
Q |
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| T |
12442653 |
gctgcaatcttgtttggtttgatattgtgtttctctg |
12442617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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