View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14164_low_27 (Length: 264)
Name: NF14164_low_27
Description: NF14164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14164_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 4532978 - 4532733
Alignment:
| Q |
1 |
aagtccttttgtccaatttatcatttatgtaatatatattactgcatattgtaatcacaacaatcaacattagaaagnnnnnnnngagtatataataatt |
100 |
Q |
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| T |
4532978 |
aagtccttttgtccaatttatcatttatgtaatatatattactgcatattgtaatcacaacaatcaacattagaaagaaaaaaaagagtatataataatt |
4532879 |
T |
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| Q |
101 |
attcaaataaaaacctattttttattactcaaattgcatttaaaaaataagtaaagatcttaccttgcacatgctataagctgaatgacagatccaaaga |
200 |
Q |
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| T |
4532878 |
attcaaataaaaacctattttttattactcaaattgcatttaaaaaataagtaaagatcttaccttgcacatgctataagctgaatgacagatccaaaga |
4532779 |
T |
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| Q |
201 |
ggagaaaagtgcaattgaaggctaaccccaatgctttccaatatct |
246 |
Q |
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| T |
4532778 |
gaagaaaagtgcaattgaaggctaaccccaatgctttccaatatct |
4532733 |
T |
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Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 153 - 244
Target Start/End: Complemental strand, 24627116 - 24627025
Alignment:
| Q |
153 |
aaagatcttaccttgcacatgctataagctgaatgacagatccaaagaggagaaaagtgcaattgaaggctaaccccaatgctttccaatat |
244 |
Q |
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| T |
24627116 |
aaagatcttacctagcacaggctataagctgaatcacagatccaaagaggaggaaagtacaattgaaagctagccccaatgctttccaatat |
24627025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 35321859 - 35321777
Alignment:
| Q |
161 |
taccttgcacatgctataagctgaatgacagatccaaagaggagaaaagtgcaattgaaggctaaccccaatgctttccaata |
243 |
Q |
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| T |
35321859 |
taccttgcacaagctatgagctggataacagatccaaagagaaggaaagtgcagttgaaagctaatccaattgctttccaata |
35321777 |
T |
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