View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14164_low_29 (Length: 261)
Name: NF14164_low_29
Description: NF14164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14164_low_29 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 21047912 - 21048174
Alignment:
| Q |
1 |
gaattggaaagctttgggatggagtacaggtattttgtggaaacttgttaacttaatagacttaaa-gaactgatnnnnnnntctacaacttgtgaaat- |
98 |
Q |
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| T |
21047912 |
gaattggaaagctttgggatggagtacaggtattttgtggaaacttgttaacttcatagacttaaaagaactgataaaaaaatctacaacttgtgaaatt |
21048011 |
T |
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| Q |
99 |
aagttttggtttcttataatacaggatcttgtgaatttgaagtcattatgcctaagtggttgcaagaacttggttgagctctcagatttgtctttggcct |
198 |
Q |
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| T |
21048012 |
aagttttggtttcttataatacaggatcttgtgaatttgaagtcattatgcctaagtggttgcaagaacttggttgagctctcagatttgtctttggcct |
21048111 |
T |
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| Q |
199 |
cgaaacttgagaaagtacatcttgatgattgtgcgagcttgttgaatgttccctcatacattt |
261 |
Q |
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| T |
21048112 |
cgaaacttgagaaagtacatcttgatgattgtgcgagcttgttgaatgttccttcatacattt |
21048174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 21060241 - 21060503
Alignment:
| Q |
1 |
gaattggaaagctttgggatggagtacaggtattttgtggaaacttgttaacttaatagacttaaa-gaactgatnnnnnnntctacaacttgtgaaat- |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| |
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| T |
21060241 |
gaattggaaagctttgggatggagtacaggtattttgtggaaacttgttaacttcatagacttaaaagaactgataaaaaaatctacaacttgtgaaatt |
21060340 |
T |
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| Q |
99 |
aagttttggtttcttataatacaggatcttgtgaatttgaagtcattatgcctaagtggttgcaagaacttggttgagctctcagatttgtctttggcct |
198 |
Q |
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| T |
21060341 |
aagttttggtttcttataatacaggatcttgtgaatttgaagtcattatgcctaagtggttgcaagaacttggttgagctctcagatttgtctttggcct |
21060440 |
T |
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| Q |
199 |
cgaaacttgagaaagtacatcttgatgattgtgcgagcttgttgaatgttccctcatacattt |
261 |
Q |
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| T |
21060441 |
cgaaacttgagaaagtacatcttgatgattgtgcgagcttgttgaatgttccttcatacattt |
21060503 |
T |
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