View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14164_low_31 (Length: 254)
Name: NF14164_low_31
Description: NF14164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14164_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 15637994 - 15638239
Alignment:
| Q |
1 |
ctgaaatcttgttcttctctcagattagccatttcaaggaaaactcagaagaggtaactgggnnnnnnntcttgaagacagagaaaagacacaattgaag |
100 |
Q |
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| T |
15637994 |
ctgaaatcttgttcttctctcagattagccatttcaaggaaaactcagaagaggtaactgggaaaaaaatcttgaagacagagaaaagacacaattgaag |
15638093 |
T |
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| Q |
101 |
aaaatattaccaagctttggttaaagggataaattcctattgctgccaaaaatgtatatg-cttcnnnnnnnnnnatgcagaatatatcacttccatttg |
199 |
Q |
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| T |
15638094 |
aaaatattaccaagctttggttaaagggataaattcttattgctgccaaaaatgtatatgacttcttttttttttatgcagaatatatcacttccatttg |
15638193 |
T |
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| Q |
200 |
tacttgtctcggtatttatagaactttatttcattcacatattctt |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
15638194 |
tacttgtctcggtatttatagaactttatttcattcacattttctt |
15638239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 4 - 244
Target Start/End: Original strand, 15588052 - 15588292
Alignment:
| Q |
4 |
aaatcttgttcttctctcagattagccatttcaaggaaaactcagaagaggtaactgggnnnnnnntcttgaagacagagaaaagacacaattgaagaaa |
103 |
Q |
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| T |
15588052 |
aaatcttgttcttctctcagattagccatttccaggaagacccagaagatgtaactgg-aaaaaaatcttgtagacagagcaaagacacaattgaagaaa |
15588150 |
T |
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| Q |
104 |
atattaccaagctttggttaaagggataaattcctattgctgcca-aaaatgtatatgcttcnnnnnnnnnnatgcagaatatatcacttccatttgtac |
202 |
Q |
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| T |
15588151 |
atactaccaagctttggtttaagggataaattcttcttgcttccactaaatatatatcagttccttttttttatgcagaatatatcacttccatttgtac |
15588250 |
T |
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| Q |
203 |
ttgtctcggtatttatagaactttatttcattcacatattct |
244 |
Q |
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| T |
15588251 |
ttgcctcggtatttatagaacatgatttcatgcacattttct |
15588292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 15592827 - 15592893
Alignment:
| Q |
70 |
tcttgaagacagagaaaagacacaattgaagaaaatattaccaagctttggttaaagggataaattc |
136 |
Q |
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| T |
15592827 |
tcttgaagacagagcaaagacgcaattgaagaagatattaccaagctctggctaaagggataaattc |
15592893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 15592773 - 15592807
Alignment:
| Q |
4 |
aaatcttgttcttctctcagattagccatttcaag |
38 |
Q |
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| T |
15592773 |
aaatcttgttcttctctcagattagccatttcaag |
15592807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 15592949 - 15592982
Alignment:
| Q |
182 |
atatatcacttccatttgtacttgtctcggtatt |
215 |
Q |
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| T |
15592949 |
atatatcacttccctttgtacttgtctcggtatt |
15592982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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