View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14164_low_37 (Length: 237)
Name: NF14164_low_37
Description: NF14164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14164_low_37 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 4781854 - 4781974
Alignment:
| Q |
1 |
tgattatccatatagggcagagaagggtgtttgcaaagcctcacaggtccttaatttctatcaaatat----tatatagcttccaaatttcttataattt |
96 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4781854 |
tgattatccatatacggcagagaagggtgtttgcaaagcctcacaggtccttaatttctatcaaatattatatatatagcttccaaatttcttataattt |
4781953 |
T |
|
| Q |
97 |
tttagttctttatattaattt |
117 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4781954 |
tttagttctttatattaattt |
4781974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 124 - 237
Target Start/End: Complemental strand, 9358986 - 9358872
Alignment:
| Q |
124 |
ttcttgatagtatacttcagcctcattgcttg-tgccnnnnnnngttttgggtgctttcctggtgtttacggtgttacgtttataggcggcaccttggtt |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9358986 |
ttcttgatagtatacttcagcctcattgcttggtgccttttttggttttgggtgctttcctggtgtttacggtgttacgtttataggcggcatcttggtt |
9358887 |
T |
|
| Q |
223 |
tgtgggtggttttta |
237 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
9358886 |
tgtgggtggttttta |
9358872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 178 - 237
Target Start/End: Complemental strand, 30836320 - 30836261
Alignment:
| Q |
178 |
tttcctggtgtttacggtgttacgtttataggcggcaccttggtttgtgggtggttttta |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30836320 |
tttcctggtgtttacggtgttacgtttataggcggcacctttgtttgtgggtggttttta |
30836261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 43268778 - 43268728
Alignment:
| Q |
187 |
gtttacggtgttacgtttataggcggcaccttggtttgtgggtggttttta |
237 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
43268778 |
gtttacagtgttacgtttatagacggcacctttgtttgtgggtggttttta |
43268728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 236
Target Start/End: Original strand, 43460590 - 43460707
Alignment:
| Q |
123 |
tttcttgatagtatacttcagcctcattgctt-gtgccnnnnnnngttttgggtgctttcctggtg--tttacggtgttacg-tttataggcggcacctt |
218 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| ||| |||||||| ||| ||||||||||||| |
|
|
| T |
43460590 |
tttcatgatagtatacttcagcctcattgcttggtgtctcgtttggttttgggtgctttcctggtgttttttgtgtgttacgttttttaggcggcacctt |
43460689 |
T |
|
| Q |
219 |
ggtttgtgggtggttttt |
236 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
43460690 |
tgtttgaaggtggttttt |
43460707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University