View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14164_low_7 (Length: 575)
Name: NF14164_low_7
Description: NF14164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14164_low_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 1 - 575
Target Start/End: Original strand, 43394514 - 43395084
Alignment:
| Q |
1 |
gtgtggtttaactctacatcagtttacattgttcacttctttgtgtttgtctcatactatcatacttcacattttctgttttttcccttgtttctttcac |
100 |
Q |
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| T |
43394514 |
gtgtggtttaactctacatcattttacattgttcacttctttgtgtttgtctcataccatcatacttcacattttctgttttttcccttgtttctttcac |
43394613 |
T |
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| Q |
101 |
aaccatatataaagggtgaaagaaatctctaatacactaaaacaatgnnnnnnntgtaaccttgagttcgatgtaattctttaaaaatgtatcaaaaatt |
200 |
Q |
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| T |
43394614 |
aaccatatataaagggtgaaagaaatctctaatacactaaaacaatgaaaaaaatgtaaccttgagttcgatgtaattctttaaaaatgtatcaaaaatt |
43394713 |
T |
|
| Q |
201 |
ccattcctctcttctatctatgtcaccattcgtgactaaatatattttccacaagataaaacaaattatatttaataatatccataattaacattttatg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || | |
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| T |
43394714 |
ccattcctctcttctatctatgtcaccattcgtgactaagtatattttccacaagataaaacaaagtatatttaataatatccataattaacattctacg |
43394813 |
T |
|
| Q |
301 |
ttagttagatacaaagacaaacctatcgagaacaagacaaatgccggcaaaattcttacagacagagtcatactgatatcttcaatgttatcaacctttc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43394814 |
ttagttagatacaaagacaaacctatcgagaacaagacaaatgccggcaaaattcttacagacagagtcatactgatatcttcaatgttatcaacc-ttc |
43394912 |
T |
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| Q |
401 |
tatgttttctacttctaccattcttacattttaataacacaaaactcatcccttttatccacctcatagagaaatcagcaatagtgtatctctcatcatc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43394913 |
tatgttttctacttctaccattcttacattttaataacacaaaactcatcccttttatccacctcatagagaaatcagcaatagtgtatctc---tcatc |
43395009 |
T |
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| Q |
501 |
aatggagcgaaggttaggaagagagaacaaagggtcactaaacctacaatacaagatggcagagacactacgtag |
575 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
43395010 |
aatggagcgaaggttaggaagagagaacaaagggtcactaaacctacaaaaaaagatggcagagacactacgtag |
43395084 |
T |
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