View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14164_low_8 (Length: 518)

Name: NF14164_low_8
Description: NF14164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14164_low_8
NF14164_low_8
[»] chr8 (13 HSPs)
chr8 (248-500)||(28429259-28429511)
chr8 (5-252)||(28430010-28430260)
chr8 (28-247)||(17844904-17845128)
chr8 (97-252)||(1214248-1214403)
chr8 (102-252)||(13241122-13241271)
chr8 (99-252)||(5725815-5725970)
chr8 (27-85)||(23273825-23273883)
chr8 (183-247)||(25382264-25382328)
chr8 (27-173)||(12722309-12722456)
chr8 (139-249)||(17856827-17856937)
chr8 (183-252)||(42573197-42573266)
chr8 (38-83)||(24580033-24580078)
chr8 (27-85)||(12520552-12520610)
[»] chr7 (5 HSPs)
chr7 (29-252)||(7738788-7739012)
chr7 (97-252)||(24504365-24504519)
chr7 (101-252)||(35759122-35759276)
chr7 (98-252)||(2746691-2746845)
chr7 (204-249)||(19127081-19127126)
[»] chr1 (10 HSPs)
chr1 (28-252)||(3167298-3167522)
chr1 (27-252)||(4941606-4941833)
chr1 (97-247)||(46149933-46150083)
chr1 (97-248)||(13269270-13269421)
chr1 (28-252)||(21485885-21486111)
chr1 (41-252)||(40777901-40778113)
chr1 (27-247)||(8221669-8221887)
chr1 (97-238)||(23288603-23288744)
chr1 (163-252)||(34771275-34771364)
chr1 (38-83)||(51879054-51879099)
[»] chr2 (14 HSPs)
chr2 (28-252)||(36076293-36076520)
chr2 (43-252)||(37605879-37606090)
chr2 (101-252)||(20506600-20506750)
chr2 (41-252)||(36520881-36521091)
chr2 (98-237)||(8267385-8267524)
chr2 (101-243)||(11033109-11033251)
chr2 (26-246)||(20511684-20511904)
chr2 (97-252)||(39303422-39303577)
chr2 (101-249)||(13536885-13537030)
chr2 (98-252)||(21136320-21136473)
chr2 (28-83)||(6606255-6606310)
chr2 (28-83)||(13511161-13511216)
chr2 (218-247)||(42074781-42074810)
chr2 (39-83)||(11033270-11033314)
[»] chr4 (11 HSPs)
chr4 (38-245)||(27572457-27572666)
chr4 (27-247)||(22851215-22851437)
chr4 (32-249)||(30563537-30563756)
chr4 (97-252)||(9363237-9363387)
chr4 (38-248)||(36193317-36193527)
chr4 (26-88)||(12885044-12885106)
chr4 (162-247)||(25505298-25505383)
chr4 (157-236)||(12885645-12885724)
chr4 (101-166)||(25505205-25505270)
chr4 (39-83)||(19145910-19145954)
chr4 (138-227)||(23464244-23464333)
[»] chr6 (6 HSPs)
chr6 (39-252)||(24209202-24209417)
chr6 (139-249)||(33105997-33106107)
chr6 (50-233)||(2603791-2603974)
chr6 (38-252)||(3860913-3861128)
chr6 (32-248)||(24585077-24585293)
chr6 (28-85)||(15494243-15494300)
[»] chr5 (9 HSPs)
chr5 (97-243)||(41732252-41732398)
chr5 (117-249)||(37941227-37941359)
chr5 (152-252)||(28440819-28440919)
chr5 (350-454)||(13373629-13373733)
chr5 (38-83)||(43585682-43585727)
chr5 (27-86)||(19527955-19528014)
chr5 (359-453)||(13426947-13427041)
chr5 (365-454)||(13447568-13447657)
chr5 (27-84)||(3956134-3956191)
[»] chr3 (9 HSPs)
chr3 (28-252)||(52032804-52033033)
chr3 (101-252)||(26536389-26536540)
chr3 (129-252)||(29019883-29020005)
chr3 (97-247)||(26104446-26104596)
chr3 (38-85)||(53461796-53461843)
chr3 (29-85)||(47042663-47042719)
chr3 (38-85)||(21795460-21795507)
chr3 (40-83)||(33440712-33440755)
chr3 (185-239)||(53461648-53461702)
[»] scaffold0443 (1 HSPs)
scaffold0443 (97-252)||(7483-7637)
[»] scaffold0069 (1 HSPs)
scaffold0069 (183-239)||(2298-2354)


Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 248 - 500
Target Start/End: Complemental strand, 28429511 - 28429259
Alignment:
Q  248 ctgtttaacagtacttaattagtttcgttnnnnnnnntgtagataatggaatatgttattattatttgagaaagaagaaacataacatacccaggcacta 347  Q
    |||||||||||||||||||||||| ||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28429511 ctgtttaacagtacttaattagttccgttaaaaaaaatgtagataatggaatatgttattattatttgagaaagaagaaacataacatacccaggcacta 28429412  T
Q  348 cggggtaaacagaattaccccattcattcttcaacatgtgaagatctgagtgacatataccacagaatagcactttgaatcttacatctttctctccagt 447  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  28429411 cggggtaaacagaattaccccattcattcttcaacatgtgaagatctgagtgacatataccacaaaatagcactttgaatcttacatctttctctccagt 28429312  T
Q  448 ttccctgcacgtacatgattcaatttaacaaatataatgccaattaaattaat 500  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28429311 ttccctgcacgtacatgattcaatttaataaatataatgccaattaaattaat 28429259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 5 - 252
Target Start/End: Complemental strand, 28430260 - 28430010
Alignment:
Q  5 cataacttccactggatcagcctcagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnn---cctct 101  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||           ||| |    
T  28430260 cataacttccactggatcagcctcagggccgacctaagggccaagcaacccaagcaagggctttaggcctcaaaattttggatgaaaaaaaaaagccttt 28430161  T
Q  102 aaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaa 201  Q
    ||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28430160 aaaaaattaatttggttataaatataatatatgatagataaatttaagacatttacataacttaactggttaccaagaaggcctcaattactcttggtaa 28430061  T
Q  202 tgaatttaaattttggtctccacaaaattgattttatataaatattctgtt 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28430060 tgaatttaaattttggtctccacaaaattgattttatataaatattctgtt 28430010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 28 - 247
Target Start/End: Complemental strand, 17845128 - 17844904
Alignment:
Q  28 cagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnnc-----ctctaaaaaattaatttggttataa 122  Q
    |||||||| ||||||||||||||||||||| |||||| | |||||||||||||||||||||              |||||||||||||||||||||||||    
T  17845128 cagggccggtctaagggccaagcaacccaagcaagggttataggcctcaaaattttggatgaaaaaaaaaaaaatctctaaaaaattaatttggttataa 17845029  T
Q  123 gtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctcc 222  Q
    ||||| ||||  | ||||||||| ||||||||| |||| |||||||| ||||||| ||| ||||||||||||||  | ||||| |||||||||| ||||     
T  17845028 gtatattatataacagataaatttaagacatttgcatagcttaactgattaccaaaaagacctcaattactcttgatcatgaaattaaattttgatctct 17844929  T
Q  223 acaaaattgattttatataaatatt 247  Q
    |||||||||||||||||||||||||    
T  17844928 acaaaattgattttatataaatatt 17844904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 97 - 252
Target Start/End: Original strand, 1214248 - 1214403
Alignment:
Q  97 cctctaaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctt 196  Q
    |||||||||||||||||   ||||||||||| |||| || | |||||||| |||||||| |||| |||||||| ||||||| |||  |||||||||||||    
T  1214248 cctctaaaaaattaattaatttataagtatattatatgacaaataaattacagacatttgcatagcttaactgattaccaaaaagatctcaattactctt 1214347  T
Q  197 tgtaatgaatttaaattttggtctccacaaaattgattttatataaatattctgtt 252  Q
     || ||||||| || |||||||||||||||||||||||||||||||||||| ||||    
T  1214348 ggtcatgaattcaatttttggtctccacaaaattgattttatataaatattatgtt 1214403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 102 - 252
Target Start/End: Complemental strand, 13241271 - 13241122
Alignment:
Q  102 aaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaa 201  Q
    ||||| ||||||||||||| |||||| |||| ||||||||||||| |||||||| |||| |||||||| ||| ||| |||| || |||||||||   | |    
T  13241271 aaaaatttaatttggttatgagtatattatatgatagataaattacagacatttgcatagcttaactgattatcaaaaaggtct-aattactctagatca 13241173  T
Q  202 tgaatttaaattttggtctccacaaaattgattttatataaatattctgtt 252  Q
     ||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  13241172 cgaactcaaattttggtctccacaaaattgattttatataaatattctgtt 13241122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 99 - 252
Target Start/End: Complemental strand, 5725970 - 5725815
Alignment:
Q  99 tctaaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttg 198  Q
    ||||||||||||||||| |||||| |||| |||| ||||||||||||| |||||||| |||||||||  || ||| ||| || ||||||||| ||||  |    
T  5725970 tctaaaaaattaatttgattataaatatattatatgatagataaattatagacatttgcataacttacttgattatcaaaaatgcctcaatttctctagg 5725871  T
Q  199 taatgaatttaaattttggtctc--cacaaaattgattttatataaatattctgtt 252  Q
    | | ||| | |||||||||||||   ||||||||||||||||||||||||| ||||    
T  5725870 tcacgaaatcaaattttggtctctatacaaaattgattttatataaatattatgtt 5725815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 23273883 - 23273825
Alignment:
Q  27 tcagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttgg 85  Q
    |||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23273883 tcagggccgtcctaagggccaagcaacccaaacaagggttttaggcctcaaaattttgg 23273825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 25382328 - 25382264
Alignment:
Q  183 cctcaattactctttgtaatgaatttaaattttggtctccacaaaattgattttatataaatatt 247  Q
    ||||||||||||||  ||||||||| ||||||| |||| ||||||||||||||||||||||||||    
T  25382328 cctcaattactcttgataatgaattcaaattttagtcttcacaaaattgattttatataaatatt 25382264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 27 - 173
Target Start/End: Original strand, 12722309 - 12722456
Alignment:
Q  27 tcagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnnc-ctctaaaaaattaatttggttataagta 125  Q
    ||||||||| ||||||||||||  ||| ||| ||| | ||||||||||||||||||||||||          || ||||||||||||||| |||||| ||    
T  12722309 tcagggccggtctaagggccaaataactcaagcaaagactttaggcctcaaaattttggatgaaaaaaaggtctttaaaaaattaatttgattataaata 12722408  T
Q  126 taatataagatagataaattaaagacatttacataacttaactggtta 173  Q
    || |||| ||||||| ||||| |||||||| |||| ||||| ||||||    
T  12722409 tattatatgatagatgaattatagacatttgcatagcttaattggtta 12722456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 139 - 249
Target Start/End: Original strand, 17856827 - 17856937
Alignment:
Q  139 ataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaaattgattttat 238  Q
    |||||||| ||||||||  ||| |||||| | ||| ||| || | || |||||||||| || || |||| |||||||||||| |||| ||||||||||||    
T  17856827 ataaattacagacatttgtatagcttaaccgattatcaaaaatgtcttaattactcttggtcataaattcaaattttggtcttcacataattgattttat 17856926  T
Q  239 ataaatattct 249  Q
    |||||||||||    
T  17856927 ataaatattct 17856937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 42573266 - 42573197
Alignment:
Q  183 cctcaattactctttgtaatgaatttaaattttggtctccacaaaattgattttatataaatattctgtt 252  Q
    |||||||||||||| || |||||||||||||||| |||| | ||||||||||||||| ||||||| ||||    
T  42573266 cctcaattactcttggtcatgaatttaaattttgatctctataaaattgattttatacaaatattttgtt 42573197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 24580078 - 24580033
Alignment:
Q  38 ctaagggccaagcaacccaaacaagggctttaggcctcaaaatttt 83  Q
    ||||||||||||| |||||| |||||||||||| ||||||||||||    
T  24580078 ctaagggccaagccacccaagcaagggctttagtcctcaaaatttt 24580033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 12520610 - 12520552
Alignment:
Q  27 tcagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttgg 85  Q
    |||||||||  ||||||||||| | |||||| |||||| |||||||||||| |||||||    
T  12520610 tcagggccggcctaagggccaaaccacccaagcaagggttttaggcctcaagattttgg 12520552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 8e-50; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 29 - 252
Target Start/End: Complemental strand, 7739012 - 7738788
Alignment:
Q  29 agggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnn-cctctaaaaaattaatttggttataagtata 127  Q
    |||||||| ||||||||||||||| | || ||||||||||| ||||||||||||||| ||         |||||||||||| ||||||||||||| ||||    
T  7739012 agggccgacctaagggccaagcaatcaaagcaagggctttaagcctcaaaattttgggtgaaaaaaaagcctctaaaaaatcaatttggttataaatata 7738913  T
Q  128 atataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaa 227  Q
     |||| || |||||||||| |||||||| |||| |||||||| |||| || ||| |||||||||||||| || ||||||| |||||||||| ||||||||    
T  7738912 ttatatgacagataaattacagacatttgcatagcttaactgattacgaaaaagacctcaattactcttggtcatgaattcaaattttggtttccacaaa 7738813  T
Q  228 attgattttatataaatattctgtt 252  Q
    |||||||||||||||||||| ||||    
T  7738812 attgattttatataaatattttgtt 7738788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 97 - 252
Target Start/End: Complemental strand, 24504519 - 24504365
Alignment:
Q  97 cctctaaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctt 196  Q
    ||||||| ||| ||||||||||||||||||| |||| || | |||| ||| |||  ||| |||||||||  || ||||||| ||  | ||||||| ||||    
T  24504519 cctctaacaaactaatttggttataagtatattatatgacaaataagttatagatgtttgcataacttagttgattaccaaaaaaacatcaattattctt 24504420  T
Q  197 tgtaatgaatttaaattttggtctccacaaaattgattttatataaatattctgtt 252  Q
     || ||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  24504419 -gtcatgaattcaaattttggtctccacaaaattgattttatataaatattttgtt 24504365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 101 - 252
Target Start/End: Complemental strand, 35759276 - 35759122
Alignment:
Q  101 taaaaaattaatttggttataagtataatataagatagataaattaaag---acatttacataacttaactggttaccaagaaggcctcaattactcttt 197  Q
    |||||||||||||| |||||||||||| |||| ||||||||||||| ||   | |||| |||| |||| ||| |||  || || | |||||||||||||     
T  35759276 taaaaaattaatttagttataagtatattatatgatagataaattatagtagatatttgcatatcttagctgtttatgaaaaaagtctcaattactcttc 35759177  T
Q  198 gtaatgaatttaaattttggtctccacaaaattgattttatataaatattctgtt 252  Q
       ||||||| ||||||||||||||||  ||||||||||||||||||||||||||    
T  35759176 agcatgaattcaaattttggtctccacggaattgattttatataaatattctgtt 35759122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 98 - 252
Target Start/End: Complemental strand, 2746845 - 2746691
Alignment:
Q  98 ctctaaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactcttt 197  Q
    ||||||||||||||||| |||||||||||| |||| ||||||||||| | ||  |||| |||||||||| || ||| ||| || |  |||||| |||||     
T  2746845 ctctaaaaaattaattttgttataagtatattatatgatagataaatcataggtatttgcataacttaattgattatcaaaaatgtttcaattgctcttg 2746746  T
Q  198 gtaatgaatttaaattttggtctccacaaaattgattttatataaatattctgtt 252  Q
     | ||||||| |||||||| ||||  ||||||||| |||||||||||||| ||||    
T  2746745 atcatgaattcaaattttgttctcagcaaaattgaatttatataaatattttgtt 2746691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 19127126 - 19127081
Alignment:
Q  204 aatttaaattttggtctccacaaaattgattttatataaatattct 249  Q
    |||| |||| |||||||||| |||||||||||||||||||| ||||    
T  19127126 aattcaaatgttggtctccataaaattgattttatataaatcttct 19127081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 8e-50; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 28 - 252
Target Start/End: Original strand, 3167298 - 3167522
Alignment:
Q  28 cagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnn--cctctaaaaaattaatttggttataagta 125  Q
    ||||||||  |||||||||||||||||||| |||||| |||||| |||||  |||||| ||          |||||||||||||||||||||||||||||    
T  3167298 cagggccggcctaagggccaagcaacccaagcaagggttttaggactcaa--ttttgggtgacaaaaaaggcctctaaaaaattaatttggttataagta 3167395  T
Q  126 taatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccaca 225  Q
    || ||||||| |||||||||| | | |||| |||| |||||||| ||||||| ||||| |||||||||||| || ||||||| |||||||||||||||||    
T  3167396 tattataagacagataaattatatatatttgcatagcttaactgattaccaaaaaggcatcaattactcttagtcatgaattcaaattttggtctccaca 3167495  T
Q  226 aaattgattttatataaatattctgtt 252  Q
    |||||||||||||||||||||| ||||    
T  3167496 aaattgattttatataaatattttgtt 3167522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 27 - 252
Target Start/End: Original strand, 4941606 - 4941833
Alignment:
Q  27 tcagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnn--cctctaaaaaattaatttggttataagt 124  Q
    ||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||          ||||||||||||||||||||| |||| |    
T  4941606 tcaggaccggtctaagggccaagcaacccaaacaagggttttaggcctcaaaattttgggtgaaaaaaaaggcctctaaaaaattaatttggtcataatt 4941705  T
Q  125 ataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccac 224  Q
    ||| |||| || | |||||||| ||| ||||  ||| |||||||| |||| || || || ||||||| |||| || ||||||| ||||||| ||||||||    
T  4941706 atattatatgacaaataaattatagatatttgaatagcttaactgattacaaaaaatgcatcaattattcttggtcatgaattcaaattttagtctccac 4941805  T
Q  225 aaaattgattttatataaatattctgtt 252  Q
    | |||||||||||||||| |||||||||    
T  4941806 acaattgattttatataactattctgtt 4941833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 97 - 247
Target Start/End: Original strand, 46149933 - 46150083
Alignment:
Q  97 cctctaaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctt 196  Q
    |||||||||||||||||||||||||| |||| ||||  | | ||||||||  ||||||| ||||||||||||| ||||||| ||| ||||||||||| ||    
T  46149933 cctctaaaaaattaatttggttataaatatattatataacaaataaattactgacatttgcataacttaactgattaccaaaaagacctcaattactttt 46150032  T
Q  197 tgtaatgaatttaaattttggtctccacaaaattgattttatataaatatt 247  Q
     || ||||||| |||||||||||||||||||||||||||| ||||||||||    
T  46150033 ggtcatgaattcaaattttggtctccacaaaattgattttctataaatatt 46150083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 97 - 248
Target Start/End: Complemental strand, 13269421 - 13269270
Alignment:
Q  97 cctctaaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctt 196  Q
    |||||||||||||||||||||| |||||||| |||| || |||||||||| | | ||||  ||| |||||||| ||||||| || ||||| |||||||||    
T  13269421 cctctaaaaaattaatttggttgtaagtatattatatgacagataaattacatatatttgtatatcttaactgattaccaaaaatgcctctattactctt 13269322  T
Q  197 tgtaatgaatttaaattttggtctccacaaaattgattttatataaatattc 248  Q
     || ||||||| ||||||| ||||||||| ||||||||||||||||||||||    
T  13269321 cgtcatgaattcaaatttttgtctccacacaattgattttatataaatattc 13269270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 28 - 252
Target Start/End: Complemental strand, 21486111 - 21485885
Alignment:
Q  28 cagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnn--cctctaaaaaattaatttggttataagta 125  Q
    |||||||| |||||||| |||||||| |||  ||||||||||||||||||||||||||  |          ||||||||||||||||||||||||| | |    
T  21486111 cagggccggtctaagggtcaagcaactcaagtaagggctttaggcctcaaaattttgggcggaaaaaaaggcctctaaaaaattaatttggttatacgga 21486012  T
Q  126 taatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccaca 225  Q
    || |||  ||||||||||||| |||||||| ||||||||||||| ||||| | || | || ||||   |||  | ||||||| || |||||||||||| |    
T  21486011 tattatgtgatagataaattatagacatttgcataacttaactgattacctaaaatgtctgaatttgccttgatcatgaattcaagttttggtctccata 21485912  T
Q  226 aaattgattttatataaatattctgtt 252  Q
    |||||||||||||||||||||||||||    
T  21485911 aaattgattttatataaatattctgtt 21485885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 41 - 252
Target Start/End: Original strand, 40777901 - 40778113
Alignment:
Q  41 agggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnn-cctctaaaaaattaatttggttataagtataatataagataga 139  Q
    ||||||||||||||||| |||| |||||||||| ||||||||| | ||         |||||||||| |||||||||||||||||||| |||| || |||    
T  40777901 agggccaagcaacccaagcaagagctttaggccacaaaattttaggtgaaaaaaaggcctctaaaaatttaatttggttataagtatattatatgacaga 40778000  T
Q  140 taaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaaattgattttata 239  Q
    ||||||| ||| ||||| |||  ||||||| ||||||| || | ||||||||| |||  | ||||||| |||||||||| || |||||||||| ||||||    
T  40778001 taaattatagatatttatatagtttaactgattaccaaaaaagtctcaattacacttgatcatgaattcaaattttggtatctacaaaattgactttata 40778100  T
Q  240 taaatattctgtt 252  Q
    |||||||| ||||    
T  40778101 taaatattttgtt 40778113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 27 - 247
Target Start/End: Complemental strand, 8221887 - 8221669
Alignment:
Q  27 tcagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnncctctaaaaaattaatttggttataagtat 126  Q
    |||||||||  |||||||||||||||||||| |||| |||||||||||||||||||| | ||           ||  |||||||||||||||||||||||    
T  8221887 tcagggccggcctaagggccaagcaacccaagcaagtgctttaggcctcaaaattttaggtgaaaaacaaaacctctaaaattaatttggttataagtat 8221788  T
Q  127 aatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaa 226  Q
    | |||| || ||||||| || |||||||| || |||||| ||| ||||||| ||||| |||||||||||  ||   ||||| ||||||||||||  ||||    
T  8221787 attatatgacagataaagtacagacatttgcacaacttacctgattaccaaaaaggcatcaattactctcggt--cgaattcaaattttggtcttaacaa 8221690  T
Q  227 aattgattttatataaatatt 247  Q
    |||||||||| ||||||||||    
T  8221689 aattgattttgtataaatatt 8221669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 97 - 238
Target Start/End: Original strand, 23288603 - 23288744
Alignment:
Q  97 cctctaaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctt 196  Q
    ||||||||||||||||||  |||||| |||| |||| ||||||||||||| |||||| | |||||| ||| || |||| || |||  |||||||||||||    
T  23288603 cctctaaaaaattaatttaattataaatatattatatgatagataaattacagacatctccataacataattgattactaaaaagaactcaattactctt 23288702  T
Q  197 tgtaatgaatttaaattttggtctccacaaaattgattttat 238  Q
      | ||||||| |||||||| |||| ||||||| ||||||||    
T  23288703 gatcatgaattcaaattttgatctctacaaaatcgattttat 23288744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 252
Target Start/End: Complemental strand, 34771364 - 34771275
Alignment:
Q  163 ttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaaattgattttatataaatattctgtt 252  Q
    ||||||| ||||||| ||| |  ||||||||||| || ||||||| |||||||| | | |||||||||| ||||||||||||||| ||||    
T  34771364 ttaactgattaccaaaaagccaccaattactcttggtcatgaattcaaattttgttatgcacaaaattggttttatataaatattatgtt 34771275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 51879054 - 51879099
Alignment:
Q  38 ctaagggccaagcaacccaaacaagggctttaggcctcaaaatttt 83  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||    
T  51879054 ctaagggccaagccacccaagcaagggctttaggcctcaaaatttt 51879099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 3e-43; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 28 - 252
Target Start/End: Original strand, 36076293 - 36076520
Alignment:
Q  28 cagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnn---cctctaaaaaattaatttggttataagt 124  Q
    |||||||| |||||| |||||||||||||| |||||| |||||||| ||||||||||  ||           |||||||||| ||||||||||||||| |    
T  36076293 cagggccggtctaagagccaagcaacccaagcaagggttttaggccacaaaattttgagtgaataaaaaaggcctctaaaaatttaatttggttataaat 36076392  T
Q  125 ataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccac 224  Q
    ||| | || |||||||||| || |||||||| ||||||||||||| ||| ||||||||||||| |||||||| ||  |||||| |||||||| |||||||    
T  36076393 atagtgtatgatagataaactacagacatttgcataacttaactgattatcaagaaggcctcagttactcttggtcttgaattcaaattttgatctccac 36076492  T
Q  225 aaaattgattttatataaatattctgtt 252  Q
    | ||||||||||||||||||||| ||||    
T  36076493 acaattgattttatataaatattatgtt 36076520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 43 - 252
Target Start/End: Complemental strand, 37606090 - 37605879
Alignment:
Q  43 ggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnn--cctctaaaaaattaatttggttataagtataatataagatagat 140  Q
    ||||||||||||||||||||||  ||||| ||||||||||||| ||          |||||||||||||||||| |||||||||||  |||| || ||||    
T  37606090 ggccaagcaacccaaacaagggtcttaggtctcaaaattttgggtgaaaacaaaggcctctaaaaaattaatttagttataagtatgttatatgacagat 37605991  T
Q  141 aaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaaattgattttatat 240  Q
    |||||| |  ||||| |||| |||||||| ||||||| ||| | |||||||||||| || ||||| | ||||||| ||||||||||||||||||||||||    
T  37605990 aaattacaagcatttgcatagcttaactgattaccaaaaagacttcaattactcttagtcatgaactcaaattttagtctccacaaaattgattttatat 37605891  T
Q  241 aaatattctgtt 252  Q
    ||||||||||||    
T  37605890 aaatattctgtt 37605879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 101 - 252
Target Start/End: Original strand, 20506600 - 20506750
Alignment:
Q  101 taaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgta 200  Q
    ||||||||||||||||||||||||||| |||  || |||||||||| ||||||||  |||||||||||  ||||||| || | ||| ||||||||| ||     
T  20506600 taaaaaattaatttggttataagtatattatgtgacagataaattacagacatttgtataacttaacttattaccaaaaaagtctctattactctt-gtc 20506698  T
Q  201 atgaatttaaattttggtctccacaaaattgattttatataaatattctgtt 252  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20506699 atgaattcaaattttggtctccacaaaattgattttatataaatattctgtt 20506750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 41 - 252
Target Start/End: Complemental strand, 36521091 - 36520881
Alignment:
Q  41 agggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnn-cctctaaaaaattaatttggttataagtataatataagataga 139  Q
    ||||||||||||||||| |||| |||||| ||||||||||||||||||         || |||||||||||||| |||||||| |||| |||| || | |    
T  36521091 agggccaagcaacccaagcaagtgctttaagcctcaaaattttggatggaaaaaattcccctaaaaaattaattgggttataattatattatatgaca-a 36520993  T
Q  140 taaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaaattgattttata 239  Q
    ||||||| ||| |||| ||||||||||||  ||| ||| | |||||  ||||||||| || ||||||| |||||||||||||||||||||||||||||||    
T  36520992 taaattacagatatttgcataacttaactaattatcaaaacggcctttattactctt-gtcatgaattcaaattttggtctccacaaaattgattttata 36520894  T
Q  240 taaatattctgtt 252  Q
    |||||||| ||||    
T  36520893 taaatattatgtt 36520881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 98 - 237
Target Start/End: Original strand, 8267385 - 8267524
Alignment:
Q  98 ctctaaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactcttt 197  Q
    |||||||||||||||||| ||||||||||| |||| || |||||||||  |||||||| |||| |||||||| ||||||| || || ||||||||||||     
T  8267385 ctctaaaaaattaatttgattataagtatattatatgagagataaattccagacatttgcatagcttaactgattaccaaaaatgcatcaattactcttg 8267484  T
Q  198 gtaatgaatttaaattttggtctccacaaaattgatttta 237  Q
    || ||||||| |||||| ||||||||||||||||||||||    
T  8267485 gtcatgaattcaaatttaggtctccacaaaattgatttta 8267524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 101 - 243
Target Start/End: Complemental strand, 11033251 - 11033109
Alignment:
Q  101 taaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgta 200  Q
    ||||||||||||||||||||||||||| |||| |||||||||| || |||||||| ||||  |||| || || |||| ||  ||||||||||||||  |     
T  11033251 taaaaaattaatttggttataagtatattatatgatagataaactacagacatttgcatagtttaattgatttccaaaaatacctcaattactcttgatc 11033152  T
Q  201 atgaatttaaattttggtctccacaaaattgattttatataaa 243  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  11033151 atgaattcaaattttggtctccacaaaattgattttatataaa 11033109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 26 - 246
Target Start/End: Original strand, 20511684 - 20511904
Alignment:
Q  26 ctcagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnncctctaaaaaattaatttggttataagta 125  Q
    ||||||||||  ||||||| ||| |||||||||||||||||||||| |||||||||||||||         | |||||||| ||||||||||||||| ||    
T  20511684 ctcagggccgccctaagggtcaaacaacccaaacaagggctttaggtctcaaaattttggataaaaaaaggcatctaaaaatttaatttggttataaata 20511783  T
Q  126 taatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccaca 225  Q
    || |||  || ||| |||||| ||||||| ||||||| || ||| ||||||| ||| |||||||||||| |  | | ||||| ||||||| |||||||||    
T  20511784 tattatctgacagaaaaattacagacattgacataacatatctgattaccaaaaagacctcaattactcctgatcaagaattcaaattttagtctccaca 20511883  T
Q  226 aaattgattttatataaatat 246  Q
    ||||| ||| |||||| ||||    
T  20511884 aaattaattatatatatatat 20511904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 97 - 252
Target Start/End: Original strand, 39303422 - 39303577
Alignment:
Q  97 cctctaaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctt 196  Q
    |||||||||||||||||||||||||| |||| ||||  | |||||||||| | |||||| ||||| |||| || ||||||| || |  |||||||||||     
T  39303422 cctctaaaaaattaatttggttataaatatattatataacagataaattacacacatttgcataaattaattgattaccaaaaatgtatcaattactcta 39303521  T
Q  197 tgtaatgaatttaaattttggtctccacaaaattgattttatataaatattctgtt 252  Q
     || || |||| |||||||| ||||||||||||||||||| ||| ||| |||||||    
T  39303522 ggtcatcaattcaaattttgatctccacaaaattgattttttatgaatgttctgtt 39303577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 101 - 249
Target Start/End: Original strand, 13536885 - 13537030
Alignment:
Q  101 taaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgta 200  Q
    ||||||||||||||||| ||||||||| |||| || |||||||||| ||||||||  ||| ||||||||   | ||| ||||  | |||||||| | ||     
T  13536885 taaaaaattaatttggtcataagtatattatatgacagataaattacagacatttgaatagcttaactg---atcaaaaaggttttaattactcatggtc 13536981  T
Q  201 atgaatttaaattttggtctccacaaaattgattttatataaatattct 249  Q
    ||||||| ||||||||||||||||  ||||| |||||||||||||||||    
T  13536982 atgaattcaaattttggtctccacgcaattgcttttatataaatattct 13537030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 98 - 252
Target Start/End: Complemental strand, 21136473 - 21136320
Alignment:
Q  98 ctctaaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactcttt 197  Q
    |||||||||||||||||||||||||| ||| |||| || |||||||||| |||||||| |||  ||||||||   ||||| ||  |||||||||| |||     
T  21136473 ctctaaaaaattaatttggttataagaatattatatgacagataaattatagacatttgcatggcttaactgacaaccaa-aaatcctcaattacgctta 21136375  T
Q  198 gtaatgaatttaaattttggtctccacaaaattgattttatataaatattctgtt 252  Q
        |||||| ||||  || |||||| ||||||||| || |||||||||||||||    
T  21136374 tatgtgaattgaaataatgatctccataaaattgatattttataaatattctgtt 21136320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 6606255 - 6606310
Alignment:
Q  28 cagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaatttt 83  Q
    ||||||||  ||||||||||||| |||||| |||||||||||||||||||||||||    
T  6606255 cagggccggcctaagggccaagccacccaagcaagggctttaggcctcaaaatttt 6606310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 13511216 - 13511161
Alignment:
Q  28 cagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaatttt 83  Q
    ||||||||| ||||||| ||||| |||||| |||||||||||||||||||||||||    
T  13511216 cagggccgacctaagggtcaagccacccaagcaagggctttaggcctcaaaatttt 13511161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 247
Target Start/End: Original strand, 42074781 - 42074810
Alignment:
Q  218 tctccacaaaattgattttatataaatatt 247  Q
    ||||||||||||||||||||||||||||||    
T  42074781 tctccacaaaattgattttatataaatatt 42074810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 11033314 - 11033270
Alignment:
Q  39 taagggccaagcaacccaaacaagggctttaggcctcaaaatttt 83  Q
    |||||| ||||||| |||| |||||| ||||||||||||||||||    
T  11033314 taagggtcaagcaatccaagcaagggttttaggcctcaaaatttt 11033270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 38 - 245
Target Start/End: Original strand, 27572457 - 27572666
Alignment:
Q  38 ctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnn--cctctaaaaaattaatttggttataagtataatataaga 135  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||          |||||||||||||||||||||||||| |||| |||| ||    
T  27572457 ctaagggccaagcaacccaagcaagggctttaggcctcaaaattttggatgaaaaaaaatgcctctaaaaaattaatttggttataattatattatatga 27572556  T
Q  136 tagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaaattgattt 235  Q
     |||||||||| ||| ||||  |||||||||||  ||||||| || || ||||||||||||  | ||||||| |||||| |||||||  ||||||||| |    
T  27572557 cagataaattatagatattttgataacttaactaattaccaaaaatgcttcaattactcttgttcatgaattcaaatttcggtctccgaaaaattgatat 27572656  T
Q  236 tatataaata 245  Q
    ||||||||||    
T  27572657 tatataaata 27572666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 27 - 247
Target Start/End: Complemental strand, 22851437 - 22851215
Alignment:
Q  27 tcagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnnc--ctctaaaaaattaatttggttataagt 124  Q
    |||||||||  |||||||| ||||||||||| |||||||||||| |||||||||||||| ||        |  |||||||||||||||||||||||||||    
T  22851437 tcagggccggcctaagggctaagcaacccaagcaagggctttagacctcaaaattttgggtgaaaaaaaacgcctctaaaaaattaatttggttataagt 22851338  T
Q  125 ataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccac 224  Q
    |||  ||| ||||||||||  | |||||||| ||||  ||||||| ||||||| ||||| |||||||||||| || |||| |  ||||||||||||  ||    
T  22851337 atatcatatgatagataaacaacagacatttgcatagtttaactgattaccaaaaaggcttcaattactcttggtcatgattccaaattttggtctttac 22851238  T
Q  225 aaaattgattttatataaatatt 247  Q
    |||||| | ||||||||||||||    
T  22851237 aaaatttactttatataaatatt 22851215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 32 - 249
Target Start/End: Original strand, 30563537 - 30563756
Alignment:
Q  32 gccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnn--cctctaaaaaattaatttggttataagtataat 129  Q
    ||||| ||||||||||||||||||||  ||||| ||||||||||||||||| | | |          | ||||||||||||||||||||||||||||| |    
T  30563537 gccgacctaagggccaagcaacccaagtaagggttttaggcctcaaaatttcgtaagaaaaaaaaggcttctaaaaaattaatttggttataagtatatt 30563636  T
Q  130 ataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaaat 229  Q
    ||| || |||||||||  ||||||||  ||| |||||||   |||||| ||||| |||||| |||||  | ||||||| | |||||||||||||||||||    
T  30563637 atatgacagataaattgtagacatttgtatagcttaactaactaccaaaaaggcttcaatttctcttgctcatgaattcagattttggtctccacaaaat 30563736  T
Q  230 tgattttatataaatattct 249  Q
    ||||||||||||||||||||    
T  30563737 tgattttatataaatattct 30563756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 97 - 252
Target Start/End: Complemental strand, 9363387 - 9363237
Alignment:
Q  97 cctctaaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctt 196  Q
    |||||| |||||||||||||||||||||||| |||| || |||||||||| |  ||||| ||||||| |     || |||| ||||||||||||||||||    
T  9363387 cctctataaaattaatttggttataagtatattatacgacagataaattacaagcatttgcataactga-----ttgccaaaaaggcctcaattactctt 9363293  T
Q  197 tgtaatgaatttaaattttggtctccacaaaattgattttatataaatattctgtt 252  Q
     || ||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  9363292 ggtcatgaattcaaattttgatctccacaaaattgattttatataaatattctgtt 9363237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 38 - 248
Target Start/End: Complemental strand, 36193527 - 36193317
Alignment:
Q  38 ctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnncctctaaaaaattaatttggttataagtataatataagata 137  Q
    |||||||||||||||| ||| |||||| |||| | ||||| |||||||||         ||||||||||||||||||||||||||||||| ||||    |    
T  36193527 ctaagggccaagcaactcaagcaagggttttaagtctcaatattttggataaaaaaaagcctctaaaaaattaatttggttataagtatattatattgca 36193428  T
Q  138 gataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaaattgatttta 237  Q
     || ||||| ||| |||| || | |||||||| ||| ||| ||| | ||||||||||||  | ||||||| |||||||| |||||||||||||||||| |    
T  36193427 aatgaattacagatatttgcacagcttaactgattatcaaaaagacttcaattactcttgatcatgaattcaaattttgatctccacaaaattgatttca 36193328  T
Q  238 tataaatattc 248  Q
    |||||||||||    
T  36193327 tataaatattc 36193317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 12885044 - 12885106
Alignment:
Q  26 ctcagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatg 88  Q
    |||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  12885044 ctcagggccggtctaagggtcaagcaacccaaacaagggttttaggcctcaaaattttggatg 12885106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 162 - 247
Target Start/End: Original strand, 25505298 - 25505383
Alignment:
Q  162 cttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaaattgattttatataaatatt 247  Q
    |||||||| ||||| | || || |||||||||||| || ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  25505298 cttaactgattacctaaaaagcttcaattactcttggtcatgaattcaaattttgatctccacaaaattgattttatataaatatt 25505383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 12885645 - 12885724
Alignment:
Q  157 cataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaaattgatttt 236  Q
    |||| ||||| || ||||||| |||||||||||||||||| || | | ||| ||||||||| ||||||||||||||||||    
T  12885645 catagcttaattgattaccaaaaaggcctcaattactcttggtcaaggattcaaattttggactccacaaaattgatttt 12885724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 25505205 - 25505270
Alignment:
Q  101 taaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaa 166  Q
    ||||||||||||||||||||| ||||| |||| || |||||||||| |||||||| |||| |||||    
T  25505205 taaaaaattaatttggttataggtatattatatgacagataaattacagacatttgcatagcttaa 25505270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 19145910 - 19145954
Alignment:
Q  39 taagggccaagcaacccaaacaagggctttaggcctcaaaatttt 83  Q
    |||||| ||||| |||||||||||||||||||||||||| |||||    
T  19145910 taagggtcaagccacccaaacaagggctttaggcctcaagatttt 19145954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 23464244 - 23464333
Alignment:
Q  138 gataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaa 227  Q
    ||||||||| |||||||| |||||||||| || |||  |  |||| || |||||||||| || ||||||| ||||| | |||||||||||    
T  23464244 gataaattatagacatttgcataacttaattgattattagaaaggtcttaattactcttagtcatgaattcaaattcttgtctccacaaa 23464333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 39 - 252
Target Start/End: Complemental strand, 24209417 - 24209202
Alignment:
Q  39 taagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnn--cctctaaaaaattaatttggttataagtataatataagat 136  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||| |          ||||||||||||||||||||||||||||||| ||||  ||    
T  24209417 taagggccaagcaacccaagcaagggctataggcctcaaaattttggacgaaaaaaaagacctctaaaaaattaatttggttataagtatattatatcat 24209318  T
Q  137 agataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaaattgatttt 236  Q
    |||||||||| |  ||||| |||||||||| || |||| || || || ||||||||| || || ||||||| |||||||  |||| ||||||| ||||||    
T  24209317 agataaattacatgcatttgcataacttaattgattacaaaaaatgcttcaattactattggtcatgaattcaaattttaatctcaacaaaatagatttt 24209218  T
Q  237 atataaatattctgtt 252  Q
    ||||||||||||||||    
T  24209217 atataaatattctgtt 24209202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 139 - 249
Target Start/End: Original strand, 33105997 - 33106107
Alignment:
Q  139 ataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaaattgattttat 238  Q
    |||||||| |||||||| |||| |||||||| ||||||| || ||||||||||||||  || ||||||| ||||||||||||||||||||||||||||||    
T  33105997 ataaattacagacatttgcatagcttaactgattaccaaaaatgcctcaattactctaggtcatgaattcaaattttggtctccacaaaattgattttat 33106096  T
Q  239 ataaatattct 249  Q
    ||||| |||||    
T  33106097 ataaacattct 33106107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 50 - 233
Target Start/End: Complemental strand, 2603974 - 2603791
Alignment:
Q  50 caacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnncctctaaaaaattaatttggttataagtataatataagatagataaattaaag 149  Q
    |||||||| ||||||||||| ||||||||||||||| ||        |||||||| |||||||||||||||||||||| ||||  | |||||||||| ||    
T  2603974 caacccaagcaagggctttaagcctcaaaattttgggtgaaaaaagacctctaaataattaatttggttataagtatattatataacagataaattacag 2603875  T
Q  150 acatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaaattgat 233  Q
    ||||||  |||||| || || |||  || ||| |||| |||||| ||  | ||||||| |||||| ||||||||||||||||||    
T  2603874 acatttgtataactcaattgattattaaaaagacctctattacttttgatcatgaattcaaatttcggtctccacaaaattgat 2603791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 38 - 252
Target Start/End: Complemental strand, 3861128 - 3860913
Alignment:
Q  38 ctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnnc--ctctaaaaaattaatttggttataagtataatataaga 135  Q
    ||||||||||||||||||||||||||| ||||||  |||||||||||| |            || |||||||||||||| ||||||| |||| |||| ||    
T  3861128 ctaagggccaagcaacccaaacaagggttttaggtttcaaaattttggctaaaaaaaaaaaactataaaaaattaatttagttataattatattatatga 3861029  T
Q  136 tagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaaattgattt 235  Q
     | |||||||| ||| ||||| |||  ||||||| ||| ||| || |  |||||||||||   | ||||||||||||||||||| |||||||||||||||    
T  3861028 catataaattacagatatttatatagattaactgattatcaaaaatggatcaattactctagatcatgaatttaaattttggtc-ccacaaaattgattt 3860930  T
Q  236 tatataaatattctgtt 252  Q
    ||||||||| |||||||    
T  3860929 tatataaatgttctgtt 3860913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 32 - 248
Target Start/End: Original strand, 24585077 - 24585293
Alignment:
Q  32 gccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnn-cctctaaaaaattaatttggttataagtataata 130  Q
    |||| |||||||||||||||| |||| ||  || ||||||||| |||||||||| ||         |||||||||||||||| | |||||||||||| ||    
T  24585077 gccggtctaagggccaagcaatccaagcagaggttttaggccttaaaattttgggtgaaaaaaatgcctctaaaaaattaatctagttataagtatatta 24585176  T
Q  131 taagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctcc-acaaaat 229  Q
    || || |||||||||  | | ||||||||||| |||||  ||| ||| || || | || ||||||| || ||||||| || ||||||||||| | |||||    
T  24585177 tatgagagataaatt--acaaatttacataacataactaattaacaaaaatgctttaactactcttggtcatgaattcaagttttggtctccaaaaaaat 24585274  T
Q  230 tgattttatataaatattc 248  Q
    | |||||||||||||||||    
T  24585275 taattttatataaatattc 24585293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 15494243 - 15494300
Alignment:
Q  28 cagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttgg 85  Q
    ||||||||  ||||||||||||| ||| || | ||||||||||||||||| |||||||    
T  15494243 cagggccggcctaagggccaagccaccaaagcgagggctttaggcctcaagattttgg 15494300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 97 - 243
Target Start/End: Complemental strand, 41732398 - 41732252
Alignment:
Q  97 cctctaaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctt 196  Q
    |||||||||| ||||| |||||||||||||| |||| ||||||||||||| |||||||| |||||  |||||| |||| || || |||| ||||||||||    
T  41732398 cctctaaaaatttaatatggttataagtatattatatgatagataaattacagacatttgcataatataactgattactaaaaatgcctaaattactctt 41732299  T
Q  197 tgtaatgaatttaaattttggtctccacaaaattgattttatataaa 243  Q
     || ||||||| |||||||| |||||| |||||||||||||||||||    
T  41732298 ggtcatgaattcaaattttgatctccataaaattgattttatataaa 41732252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 117 - 249
Target Start/End: Complemental strand, 37941359 - 37941227
Alignment:
Q  117 ttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttg 216  Q
    ||||||||||| |||| ||||||||||||  ||||||||  |||||||||||   ||  || ||| |||||||||||||| || ||||||| ||||||||    
T  37941359 ttataagtatattatatgatagataaattgcagacatttgtataacttaactcactataaaaaagacctcaattactcttggtcatgaattcaaattttg 37941260  T
Q  217 gtctccacaaaattgattttatataaatattct 249  Q
    ||||| |||||||||||||||||||||||||||    
T  37941259 gtctcaacaaaattgattttatataaatattct 37941227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 152 - 252
Target Start/End: Original strand, 28440819 - 28440919
Alignment:
Q  152 atttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaaattgattttatataaatattctgt 251  Q
    |||| |||| |||||||| ||||||| ||||| |||||||||||| || || |||| |||||||  ||||||||||||||||||||||||||||||||||    
T  28440819 atttgcataccttaactgattaccaaaaaggcttcaattactcttggtcataaattcaaattttaatctccacaaaattgattttatataaatattctgt 28440918  T
Q  252 t 252  Q
    |    
T  28440919 t 28440919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 350 - 454
Target Start/End: Original strand, 13373629 - 13373733
Alignment:
Q  350 gggtaaacagaattaccccattcattcttcaacatgtgaagatctgagtgacatataccacagaatagcactttgaatcttacatctttctctccagttt 449  Q
    ||||||| |||| ||||||| || ||||||| |||||| ||||| || ||||||||||||||  |||| |||||||||   |||||||| ||||| ||||    
T  13373629 gggtaaatagaactaccccactcgttcttcagcatgtggagatccgaatgacatataccacaatatagtactttgaatgccacatctttttctcccgttt 13373728  T
Q  450 ccctg 454  Q
    |||||    
T  13373729 ccctg 13373733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 43585727 - 43585682
Alignment:
Q  38 ctaagggccaagcaacccaaacaagggctttaggcctcaaaatttt 83  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||    
T  43585727 ctaagggccaagccacccaagcaagggctttaggcctcaaaatttt 43585682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 19527955 - 19528014
Alignment:
Q  27 tcagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttgga 86  Q
    |||||||||  ||||| |||||||||||||| ||| | ||||||||||||||||||||||    
T  19527955 tcagggccggcctaagtgccaagcaacccaatcaatgactttaggcctcaaaattttgga 19528014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 453
Target Start/End: Original strand, 13426947 - 13427041
Alignment:
Q  359 gaattaccccattcattcttcaacatgtgaagatctgagtgacatataccacagaatagcactttgaatcttacatctttctctccagtttccct 453  Q
    ||||| |||||||||||||||| ||| || ||||| | |||||||||||||||  | | ||| ||||||  |||||||||||| || ||||||||    
T  13426947 gaattgccccattcattcttcatcatatggagatcagtgtgacatataccacaatacaacaccttgaatgctacatctttctcacctgtttccct 13427041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 454
Target Start/End: Original strand, 13447568 - 13447657
Alignment:
Q  365 ccccattcattcttcaacatgtgaagatctgagtgacatataccacagaatagcactttgaatcttacatctttctctccagtttccctg 454  Q
    ||||||||||||| ||  |||||||| || ||||||||||| |||||  ||| ||| ||||||  |||||||||||| || |||||||||    
T  13447568 ccccattcattctgcataatgtgaaggtcagagtgacatatcccacaatataacaccttgaatgctacatctttctcacccgtttccctg 13447657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 3956191 - 3956134
Alignment:
Q  27 tcagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttg 84  Q
    |||||||||| | |||||| |||| |||||| ||||||||||||||||| | ||||||    
T  3956191 tcagggccgacccaagggctaagccacccaagcaagggctttaggcctccagattttg 3956134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 28 - 252
Target Start/End: Complemental strand, 52033033 - 52032804
Alignment:
Q  28 cagggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttggatgnnnnnnnn-cctctaaaaaattaatttggttataagtat 126  Q
    |||||||| ||||||||||||||||||||| |||||| |||||||| || |||||||||||         |||| ||| ||||||||| |||||||||||    
T  52033033 cagggccggtctaagggccaagcaacccaagcaagggttttaggccacacaattttggatgaaaaaaaggcctcgaaagaattaattttgttataagtat 52032934  T
Q  127 aatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattt---tggtctcca 223  Q
    | |||| || | |||||||| |||||||| |||| ||||| |  ||||||| || | ||||||| ||||| || ||||||| ||||||   |||||||||    
T  52032933 attatatgacatataaattatagacatttgcatagcttaaattattaccaaaaaagtctcaattgctcttggtcatgaattcaaattttggtggtctcca 52032834  T
Q  224 caaaattga-ttttatataaatattctgtt 252  Q
    ||||||||| |||||| |||||||| ||||    
T  52032833 caaaattgatttttatttaaatattttgtt 52032804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 101 - 252
Target Start/End: Original strand, 26536389 - 26536540
Alignment:
Q  101 taaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgta 200  Q
    ||||||||||||||||||||||||||| |||   | ||||||| || |||||||   ||| |||||||| ||| ||| ||  ||||||||||| || ||     
T  26536389 taaaaaattaatttggttataagtatattatcttacagataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtc 26536488  T
Q  201 atgaatttaaattttggtctccacaaaattgattttatataaatattctgtt 252  Q
    || |||| || |||||||||||||||||||||||||||||||||||||||||    
T  26536489 ataaattcaagttttggtctccacaaaattgattttatataaatattctgtt 26536540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 129 - 252
Target Start/End: Original strand, 29019883 - 29020005
Alignment:
Q  129 tataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctttgtaatgaatttaaattttggtctccacaaaa 228  Q
    |||| ||||||| ||||| ||||||||  ||||| |||||| |||| || ||  |||||||||||||| || ||||||| |||||| ||||||| |||||    
T  29019883 tatatgatagatgaattacagacatttgtataacataactgattactaaaaaa-cctcaattactcttggtcatgaattcaaatttcggtctcctcaaaa 29019981  T
Q  229 ttgattttatataaatattctgtt 252  Q
    ||||||||||||||||||||||||    
T  29019982 ttgattttatataaatattctgtt 29020005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 97 - 247
Target Start/End: Complemental strand, 26104596 - 26104446
Alignment:
Q  97 cctctaaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctt 196  Q
    |||||||||||||||||| ||||||| |||| |||| || | |||||||| |||| ||| |||| ||||| ||  ||  || ||| | ||||||||||||    
T  26104596 cctctaaaaaattaatttagttataattatattatatgacaaataaattagagacgtttgcatagcttaattgaatataaaaaagacatcaattactctt 26104497  T
Q  197 tgtaatgaatttaaattttggtctccacaaaattgattttatataaatatt 247  Q
     || ||||||| |||||||  |||||||| |||||||||||||||| ||||    
T  26104496 ggtcatgaattcaaattttaatctccacacaattgattttatataactatt 26104446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 53461843 - 53461796
Alignment:
Q  38 ctaagggccaagcaacccaaacaagggctttaggcctcaaaattttgg 85  Q
    ||||||||||||||||| | ||||||| ||||||||||||||||||||    
T  53461843 ctaagggccaagcaacctacacaagggttttaggcctcaaaattttgg 53461796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 47042663 - 47042719
Alignment:
Q  29 agggccgatctaagggccaagcaacccaaacaagggctttaggcctcaaaattttgg 85  Q
    |||||||  ||||||||||||| |||||||||| |||||||||| |||| |||||||    
T  47042663 agggccggcctaagggccaagccacccaaacaatggctttaggcatcaagattttgg 47042719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 21795460 - 21795507
Alignment:
Q  38 ctaagggccaagcaacccaaacaagggctttaggcctcaaaattttgg 85  Q
    ||||||||||||| | |||| ||||||||||||||||||| |||||||    
T  21795460 ctaagggccaagccatccaagcaagggctttaggcctcaagattttgg 21795507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 33440755 - 33440712
Alignment:
Q  40 aagggccaagcaacccaaacaagggctttaggcctcaaaatttt 83  Q
    ||||||||||| |||||| |||||||||||||||||||| ||||    
T  33440755 aagggccaagccacccaagcaagggctttaggcctcaaattttt 33440712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 53461702 - 53461648
Alignment:
Q  185 tcaattactctttgtaatgaatttaaattttggtctccacaaaattgattttata 239  Q
    ||||||| |||| || || |||| |||||||||| ||||||||||||||||||||    
T  53461702 tcaattattcttggtcataaattcaaattttggtatccacaaaattgattttata 53461648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0443 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 97 - 252
Target Start/End: Complemental strand, 7637 - 7483
Alignment:
Q  97 cctctaaaaaattaatttggttataagtataatataagatagataaattaaagacatttacataacttaactggttaccaagaaggcctcaattactctt 196  Q
    ||||||||||||||||||||||| ||| ||| |||| ||||||||||||| |||||||| |||| |||||||| | ||||| || ||||||||||| |||    
T  7637 cctctaaaaaattaatttggttagaagcatattatatgatagataaattatagacattttcatagcttaactgataaccaa-aaagcctcaattacgctt 7539  T
Q  197 tgtaatgaatttaaattttggtctccacaaaattgattttatataaatattctgtt 252  Q
         |||||| ||||||||||||| | ||||||||| || |||| ||||||||||    
T  7538 atctgtgaattgaaattttggtctctataaaattgatattttatatatattctgtt 7483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 2298 - 2354
Alignment:
Q  183 cctcaattactctttgtaatgaatttaaattttggtctccacaaaattgattttata 239  Q
    |||||||||||||| || ||||||| |||||||| |||| | |||||||||||||||    
T  2298 cctcaattactcttggtcatgaattcaaattttgatctctataaaattgattttata 2354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University