View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14165_high_10 (Length: 347)
Name: NF14165_high_10
Description: NF14165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14165_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 9 - 329
Target Start/End: Complemental strand, 181280 - 180960
Alignment:
| Q |
9 |
gacatcatcagtgcaagaactctgaaagagggatgcccgaaacgagcatgccatatagaaggggaggcagagcaggtggaagcaagagtagtgggttgat |
108 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
181280 |
gacatcattagtgcaagaactctgaaagagggatgcccgaaacgagcatgccatatagaaggtgaggcagagcaagtggaagcaagagcagtgggttgat |
181181 |
T |
|
| Q |
109 |
attgagacatataatgaaaggtgtagagatcactgttacttgaaccgcgcatcaacgtcacccccgtgacctgatccttcacacagaaaaaggtagggtg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
181180 |
attgagacatataatgaaaggtgtagagatcactgttactggaaccgcgcatcaacgtcacccccgtgacctgatccttcacacagaaaaaggtagggtg |
181081 |
T |
|
| Q |
209 |
aaattcaagatatgtattgttagacttgcagaatttcttaacagatatgagattatgtttagcatttgggacacaaagcaccttatttaatttgaaagta |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
181080 |
caattcaagatatgtattgttagacttgcagaatttcttaacatatatgagattatgtttagcatttgggacacaaagcacattatttaatttgaaagta |
180981 |
T |
|
| Q |
309 |
atattgggggtagggagggta |
329 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
180980 |
atatttggggtagggagggta |
180960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 9 - 329
Target Start/End: Complemental strand, 1701707 - 1701387
Alignment:
| Q |
9 |
gacatcatcagtgcaagaactctgaaagagggatgcccgaaacgagcatgccatatagaaggggaggcagagcaggtggaagcaagagtagtgggttgat |
108 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
1701707 |
gacatcatttgtgcaagaactctgaaagagggatgaccgaaacgagcatgccataaagaaggggaggcggagcaggtggaagcaagagcagtgggttgat |
1701608 |
T |
|
| Q |
109 |
attgagacatataatgaaaggtgtagagatcactgttacttgaaccgcgcatcaacgtcacccccgtgacctgatccttcacacagaaaaaggtagggtg |
208 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1701607 |
attgagacttaggatgaaaggtgtagagatcactgttacttgaaccgcgcatcaacgtcgcccccgtgacctgatcctttacacagaaaaaggtagggtg |
1701508 |
T |
|
| Q |
209 |
aaattcaagatatgtattgttagacttgcagaatttcttaacagatatgagattatgtttagcatttgggacacaaagcaccttatttaatttgaaagta |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1701507 |
aaattcaagatatgtattgttagacttgcagaatttcttaacatatatgagattatgtttagcatttgggacacaaagcacattatttaatttgaaagta |
1701408 |
T |
|
| Q |
309 |
atattgggggtagggagggta |
329 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
1701407 |
gtattgggggtagggagggta |
1701387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University