View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14165_high_11 (Length: 343)
Name: NF14165_high_11
Description: NF14165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14165_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 13 - 324
Target Start/End: Complemental strand, 47814318 - 47814006
Alignment:
| Q |
13 |
attctgacatgccttcgatcagccactaggccggggatgttaatcaactgtgccaaaaccctagacatgattcttagattgttcactgcattcattgatg |
112 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47814318 |
attctgacatgccttcgaccagccactaggccggggatgttaatcgactgtgccaaaaccctagacatgattcttagattgttcactgcattcattgatg |
47814219 |
T |
|
| Q |
113 |
aaaaaatatattatcaaacaagtaattcacatgaaatatataattaaa-tgtgttcttgcattcatacaatctgtgtacagttaaattacatttcttttg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47814218 |
aaaaaatatattatcaaacaagtaattcacatgaaatatataattaaaatgtgttcttgcattcatacaatctgtgtacagttaaattacatttcttttg |
47814119 |
T |
|
| Q |
212 |
aaacttcccactatttatgaaggctcaaagtgaaagttagtctcaaaatgcaatacaaaactataaggcatgtgaatgataaatcaaatttctcaattta |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47814118 |
aaacttcccactatttatgaaggctcaaagtgaaagttagtctcaaaatgcaatacaaaactataaggcatgtgaatgataaatcaaatttctcaattta |
47814019 |
T |
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| Q |
312 |
aatcattgctagt |
324 |
Q |
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||||||||||||| |
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| T |
47814018 |
aatcattgctagt |
47814006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 17 - 309
Target Start/End: Complemental strand, 47378726 - 47378422
Alignment:
| Q |
17 |
tgacatgccttcgatcagccactaggccggggatgttaatcaactgtgccaaaaccctagacatgattcttagattgttcactgcattcattgatgaaaa |
116 |
Q |
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|||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
47378726 |
tgacatgccttcgaccagccactaggccggggacattaatcgactgtgccaaaaccctagacatgattccggaattgttcactgcattcgttgatgaaaa |
47378627 |
T |
|
| Q |
117 |
aatatattatcaaacaagtaattcacatgaaata-------------tataattaaatgtgttcttgcattcatacaatctgtgtacagttaaattacat |
203 |
Q |
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| T |
47378626 |
aatatatcagcaaacatgtaattcaaatgaaataacacactgccccgtataattaaatgtgtacttgcattcttacaataaatgtacagataaattacat |
47378527 |
T |
|
| Q |
204 |
ttcttttgaaacttcccactatttatgaaggctcaaagtgaaagttagtc--tcaaaatgcaatacaaaactataaggcatgtgaatgataaatcaaatt |
301 |
Q |
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||||||||||||||||||| | | || ||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47378526 |
ttcttttgaaacttcccacaa---acgagggctcaaagtgaaagttagtcaatcagaatgcaatacaaaactataaggcatatgaatgataaatcaaatt |
47378430 |
T |
|
| Q |
302 |
tctcaatt |
309 |
Q |
| |
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| |||||| |
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| T |
47378429 |
tttcaatt |
47378422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 40241821 - 40241693
Alignment:
| Q |
17 |
tgacatgccttcgatcagccactaggccggggatgttaatcaactgtgccaaaaccctagacatgattcttagattgttcactgca-ttcattgatgaaa |
115 |
Q |
| |
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|||||||||||||| |||||||||| || |||| |||||| |||| |||||| ||||||||||||||| | ||||||||||| || ||||| || ||| |
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| T |
40241821 |
tgacatgccttcgaccagccactagaccagggacattaatcgactgcgccaaagccctagacatgattcctggattgttcactacatttcatccataaaa |
40241722 |
T |
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| Q |
116 |
aaatatattatcaaacaagtaattcacat |
144 |
Q |
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|| |||||| || |||| |||||||||| |
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| T |
40241721 |
aagcatattagcagacaattaattcacat |
40241693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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