View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14165_high_13 (Length: 288)
Name: NF14165_high_13
Description: NF14165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14165_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 43380012 - 43379798
Alignment:
| Q |
8 |
ttctctctcgacaaaaaattatcatacggaccttagtgtcacaattaaaggaatattaaaataaacagttgccaaattaacctgtactaatccataaatt |
107 |
Q |
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| T |
43380012 |
ttctttctcgacaaaaaattatcatacggaccttagtgtcacaattaaaggaatattaaaataaacagttgccaaattaacctgtactaatccataaatt |
43379913 |
T |
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| Q |
108 |
aaactaaactatatccatcagtccaataagcttgcgttggatttgaataggatgacccttctatatgttcaagggctatactatctacaacttgcttctt |
207 |
Q |
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| T |
43379912 |
aaactaaactatatccatcagtccaataagcttgcgttggatttgaataggatgacccttctatatgttcaagggctatactgtctacaacttgcttctt |
43379813 |
T |
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| Q |
208 |
ccgtccattattttt |
222 |
Q |
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| T |
43379812 |
ccgtccattattttt |
43379798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 43379804 - 43379754
Alignment:
| Q |
238 |
tattttttagactatattttgggcatttgggccttttgacttatatagatt |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43379804 |
tattttttagactatattttgggcatttgggccttttgacttatatagatt |
43379754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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