View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14165_high_2 (Length: 573)

Name: NF14165_high_2
Description: NF14165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14165_high_2
NF14165_high_2
[»] chr3 (2 HSPs)
chr3 (14-331)||(52751752-52752064)
chr3 (405-554)||(52751569-52751723)
[»] chr8 (2 HSPs)
chr8 (340-424)||(42678092-42678177)
chr8 (350-395)||(38463912-38463958)
[»] chr1 (1 HSPs)
chr1 (350-434)||(24857108-24857193)
[»] chr4 (1 HSPs)
chr4 (341-386)||(1074260-1074305)
[»] chr7 (2 HSPs)
chr7 (350-386)||(8677581-8677617)
chr7 (350-401)||(34634525-34634577)
[»] chr5 (1 HSPs)
chr5 (350-386)||(8851871-8851907)


Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 14 - 331
Target Start/End: Complemental strand, 52752064 - 52751752
Alignment:
Q  14 caaaggcagagagatcggtgtggcttatgaagtgtcctgttgctgttgctaaatcatggcagaatcacccaccttctcaacctctttccaaagtcgtttt 113  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52752064 caaaggcagagagatcagtgtggcttatgaagtgtcctgttgctgttgctaaatcatggcagaatcacccaccttctcaacctctttccaaagtcgtttt 52751965  T
Q  114 ttctattgatcctcttcttcctgaagacgatcctgctcatcttcaggnnnnnnnnnnnnnnnnnnnnnnnaccttcactatccctagttttggtttaatt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||                        |||||||||||||||||||||||||||||    
T  52751964 ttctattgatcctcttcttcctgaagacgatcctgctcatcttcaggttctttttcttcttctctttcttcccttcactatccctagttttggtttaatt 52751865  T
Q  214 actttctacttgtttaattataggactattataattatactttgattttattttatgttatgctatttaggtcggtttggttttattgttaataatcatt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52751864 actttctacttgtttaattataggactattataattatactttg-----attttatgttatgctatttaggtcggtttggttttattgttaataatcatt 52751770  T
Q  314 ttgtcaaagcctttgcaa 331  Q
    ||||||||||||||||||    
T  52751769 ttgtcaaagcctttgcaa 52751752  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 405 - 554
Target Start/End: Complemental strand, 52751723 - 52751569
Alignment:
Q  405 caacagttcttgtgttggaccagtccatatggagcttggttttccgaattaattggtccttgggttggatattaagtt-----nnnnnnnnnnnnnnnnn 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||                          
T  52751723 caacagttcttgtgttggaccagtccatatggagcttggttttccgaattaatcggtccttgggttggatattaagttaaaaaaaaaaaataaaaaaaaa 52751624  T
Q  500 tggagctatactcttgttaaatttcagttttattctgtatattcgatttctgagc 554  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52751623 tggagctatactcttgttaaatttcagttttattctgtatattcgatttctgagc 52751569  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 340 - 424
Target Start/End: Original strand, 42678092 - 42678177
Alignment:
Q  340 ttggttaagtcttgagacctagaagtgtgctcctctctaggtctca-gtttgaatcctccaggagccaacagttcttgtgttggac 424  Q
    ||||| ||| |||||||||||| |||||||||| |||||||||||| ||| || || |||||| ||||||| ||||||||||||||    
T  42678092 ttggtgaagacttgagacctaggagtgtgctccactctaggtctcaggttcgagtcttccaggtgccaacaattcttgtgttggac 42678177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 395
Target Start/End: Original strand, 38463912 - 38463958
Alignment:
Q  350 cttgagacctagaagtgtgctcctctctaggtctca-gtttgaatcc 395  Q
    |||| ||||||| ||||||||||||||||||||||| ||||||||||    
T  38463912 cttgggacctaggagtgtgctcctctctaggtctcaggtttgaatcc 38463958  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 434
Target Start/End: Complemental strand, 24857193 - 24857108
Alignment:
Q  350 cttgagacctagaagtgtgctcctctctaggtctcag-tttgaatcctccaggagccaacagttcttgtgttggaccagtccatat 434  Q
    |||| ||||||  |||||||||||||||| ||||||| ||||||| |||||||  |||||| ||| |||||||| |||||||||||    
T  24857193 cttgggacctaagagtgtgctcctctctaagtctcaggtttgaattctccaggtaccaacaattcatgtgttgggccagtccatat 24857108  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 386
Target Start/End: Original strand, 1074260 - 1074305
Alignment:
Q  341 tggttaagtcttgagacctagaagtgtgctcctctctaggtctcag 386  Q
    |||| ||| |||||||||||| ||||||||||||||||| ||||||    
T  1074260 tggtgaaggcttgagacctaggagtgtgctcctctctagttctcag 1074305  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 386
Target Start/End: Complemental strand, 8677617 - 8677581
Alignment:
Q  350 cttgagacctagaagtgtgctcctctctaggtctcag 386  Q
    |||||||||||| || |||||||||||||||||||||    
T  8677617 cttgagacctaggagggtgctcctctctaggtctcag 8677581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 401
Target Start/End: Complemental strand, 34634577 - 34634525
Alignment:
Q  350 cttgagacctagaagtgtgctcctctctaggtctc-agtttgaatcctccagg 401  Q
    |||||||||||  ||||| |||||||||||||||| | |||||||||||||||    
T  34634577 cttgagacctaagagtgtcctcctctctaggtctcaaatttgaatcctccagg 34634525  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 386
Target Start/End: Original strand, 8851871 - 8851907
Alignment:
Q  350 cttgagacctagaagtgtgctcctctctaggtctcag 386  Q
    |||||||||||| |||||| |||||||||||||||||    
T  8851871 cttgagacctaggagtgtgttcctctctaggtctcag 8851907  T

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