View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14165_high_4 (Length: 547)
Name: NF14165_high_4
Description: NF14165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14165_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 425
Target Start/End: Original strand, 33628170 - 33628575
Alignment:
| Q |
18 |
atattttctatgtgaaacttttgtttttcccaatatcaacatcgctaaataatgctacataaagaaatgccacataagcataaattggaaagaaatttag |
117 |
Q |
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| T |
33628170 |
atattttctatgtgaaacttttgtttttcccaatatcaacatcgctaaataatgctacataaagaaatgccacataagcataaattggaaagaaatttag |
33628269 |
T |
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| Q |
118 |
gatgataattcccaaatcacaatgagagccaaaaaatgctcaattgtaatacttttggggtcaagtacaactttatttttgtgtgtgtagaaaaggggtt |
217 |
Q |
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| T |
33628270 |
gatgataattcccaaatcacaatgagagccaaaaaatgctcaattgtaatacttttggggtcaagtgcaactttatttttgtgtgtgtagaaaaggggct |
33628369 |
T |
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| Q |
218 |
aagctccaaatatttgtgtaagttgtaannnnnnnnnnngtttggtcaatcgaatttgaataaaaatttggagaaaggctacattaaacttgcttttacg |
317 |
Q |
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| T |
33628370 |
aagctccaaatatttgtgtgagttgtaa-ttttttttttgtttggtcaatcgaatttgaataaaaatttggagataggccacattaaacttgcttttagg |
33628468 |
T |
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| Q |
318 |
tttgaannnnnnnncttctatagattcataggaagaaattctattcgagtcttgtgagacgctacatatgaataccctctaaactatgattcaaatgttg |
417 |
Q |
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| T |
33628469 |
tttgaatttttttt-ttctataggttcataggaagaaattctattcgagtcttgtgagacgctaaatataaataccctctaaactatgattcaaatgttg |
33628567 |
T |
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| Q |
418 |
atttgtca |
425 |
Q |
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| T |
33628568 |
atttgtca |
33628575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 468 - 537
Target Start/End: Original strand, 33628593 - 33628662
Alignment:
| Q |
468 |
ttgattcctcaagttatgaaagtttatctccattaatttccggtagacctaaatccttttcatgcctttg |
537 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33628593 |
ttgattcctcaagttatgaaagtttatctccattaatttccggtagacctaaatccttttcatgcctttg |
33628662 |
T |
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