View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14165_high_9 (Length: 371)
Name: NF14165_high_9
Description: NF14165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14165_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 5415908 - 5415540
Alignment:
| Q |
1 |
gatacaaaaagttggtcacctttggtcaaactatcaactttgataacat------ggctatgggagaagccctaaaatattggcaaatcatcacattgat |
94 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5415908 |
gatacaaaaagttggtcacctttgatcaaactatcaactttgataacattgttggggccatgggagaagccctaaaatattggcaaatcatcacattgat |
5415809 |
T |
|
| Q |
95 |
ctgagagtaaacataagttatttgaacaccacatcttcgtccaaaagctaaagacattagatatacgagtctctttacttaaatcttgctcaacatccac |
194 |
Q |
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||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||| |||| |||||| |
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| T |
5415808 |
ctgagagcaaacataagttatttgaacaccacatcttcgttcaaaagctaaagacattagatatatggatctctttacttaaatcttattcaaaatccac |
5415709 |
T |
|
| Q |
195 |
tttttcaaatgtaagactcttactcacacttgatatatcaacgatttatcnnnnnnnnnnnnnnnnnnnnnnnnnatattacctttgacacatctagaat |
294 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
5415708 |
ttttccaaatgtaagactcttactcacacttgatatatcaacgatttatcttttttattttatttttatttttttatattatctttgacacatctagaat |
5415609 |
T |
|
| Q |
295 |
gacatgtcattgttgccacatatgactaatattctcacgtgaagtctacttcaccttcatcttcatctc |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5415608 |
gacatgtcattgttgccacatatgactaatattctcacgtgaagtctacttcaccttcatcttcttctc |
5415540 |
T |
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