View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14165_low_1 (Length: 778)
Name: NF14165_low_1
Description: NF14165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14165_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 15 - 444
Target Start/End: Complemental strand, 30423695 - 30423266
Alignment:
| Q |
15 |
aatatcattggtcgtttctgttatttgatagtatacccagaacagtaatgcctgggtgtatcttaaaattggcagaaagttttgttgttgattgaattag |
114 |
Q |
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| T |
30423695 |
aatatcattggtcgtttctgttatttgatagtatacccagaacagtaatgcctgggtgtatcttaaaattggcagaaagttttgttgttgattgaattag |
30423596 |
T |
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| Q |
115 |
gattttgggatgcgtgcgaatgttcaataaggttaaagttgttatgaataggatgctcgtgacttgaatcttttttacttataataataatggtgttagg |
214 |
Q |
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| T |
30423595 |
gattttgggatgcgtgcgaatgttcaataaggttaaagttgttatgaataggatgctcgtgacttgaatcttttttacttataataataatggtgttagg |
30423496 |
T |
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| Q |
215 |
aatattgtgttgaagcttaagtttattatcctggcggcgttgatctgtctgatggtggaattttgtttacttcgtctttttagtttaaaaagagtaccac |
314 |
Q |
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| T |
30423495 |
aatattgtgttgaatcttaagtttattatcctggtggcgttgatctgtctgatggtggaattttgtttacttcgtctttttagtttaaaaagagtaccac |
30423396 |
T |
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| Q |
315 |
ctccatctctaaaatatagggtcctgttaacttaattataggaattaagaatgttatttatttaagtatatgttctgtgatcacatgtggagtctaacca |
414 |
Q |
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| T |
30423395 |
ctccatctctaaaatatagggtcctgttaacttaattataggaattaagaatgttatttatttaagtatatgttctgtgatcacatgtggagtctaacca |
30423296 |
T |
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| Q |
415 |
gaaaaagtgccggtcttaacaaattaccat |
444 |
Q |
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| T |
30423295 |
gaaaaagtgccggtcttaacaaattaccat |
30423266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 441 - 731
Target Start/End: Complemental strand, 30423223 - 30422915
Alignment:
| Q |
441 |
ccataaatctttccaccatgccaacgctttaagcctcccctccttctcaagacacccaccgagccaccaacaccttaaac---aaacttccttgattccc |
537 |
Q |
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| T |
30423223 |
ccataaatctttccaccatgccaacgctttaagcctcccctccttctcaagacacccaccgagccaccaacaccttaaacaataaacttccttgattccc |
30423124 |
T |
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| Q |
538 |
acccattcttcaacaccattttcctagcaaagaaatgttaaacttcatcatcct-----------aaatctccgttctcctgatcaagtcacacctgatc |
626 |
Q |
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| T |
30423123 |
atccattcttcaacgccatttttctagcaaagaaatgttaaacttcatcatcctgtaaacctgtcaaatcttcattctcctgatcaagtcacacctgatt |
30423024 |
T |
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| Q |
627 |
caattttacatggtgaacttttctacactctc----ccctcataaaaatcatttaaaaagaaattaattgaccatctaacgaatgattcccactcttcaa |
722 |
Q |
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||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30423023 |
caattttacctggtgaacttttctacactctcacttccctcataaaaatcatttaaaaagaaattaattgaccatctaacgaatgattcccgctcttcaa |
30422924 |
T |
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| Q |
723 |
cccgcacac |
731 |
Q |
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|| |||||| |
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| T |
30422923 |
ccggcacac |
30422915 |
T |
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