View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14165_low_18 (Length: 250)

Name: NF14165_low_18
Description: NF14165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14165_low_18
NF14165_low_18
[»] chr7 (16 HSPs)
chr7 (175-234)||(145519-145578)
chr7 (165-203)||(42095934-42095972)
chr7 (164-203)||(3830100-3830139)
chr7 (164-203)||(16577850-16577889)
chr7 (164-203)||(16587773-16587812)
chr7 (164-203)||(27462426-27462465)
chr7 (164-203)||(42753517-42753556)
chr7 (173-203)||(7670466-7670496)
chr7 (175-233)||(18714451-18714508)
chr7 (172-234)||(39926536-39926597)
chr7 (173-234)||(5458070-5458130)
chr7 (175-203)||(10244759-10244787)
chr7 (163-199)||(19416550-19416586)
chr7 (175-203)||(19599177-19599205)
chr7 (175-203)||(20085760-20085788)
chr7 (175-203)||(23147322-23147350)
[»] chr5 (14 HSPs)
chr5 (163-234)||(4009868-4009939)
chr5 (163-203)||(22522790-22522830)
chr5 (178-234)||(32200451-32200506)
chr5 (163-234)||(6624778-6624848)
chr5 (164-203)||(27086110-27086149)
chr5 (164-203)||(40715939-40715978)
chr5 (165-203)||(25979876-25979914)
chr5 (173-234)||(39782886-39782947)
chr5 (171-203)||(4763183-4763215)
chr5 (163-203)||(6489039-6489079)
chr5 (175-203)||(13864376-13864404)
chr5 (176-236)||(16036827-16036886)
chr5 (175-203)||(20721082-20721110)
chr5 (175-203)||(42473926-42473954)
[»] chr6 (18 HSPs)
chr6 (165-231)||(33824886-33824951)
chr6 (166-203)||(27928098-27928135)
chr6 (163-203)||(17151268-17151308)
chr6 (163-203)||(26548283-26548323)
chr6 (164-203)||(8569741-8569780)
chr6 (175-234)||(15187065-15187123)
chr6 (175-234)||(15473483-15473541)
chr6 (164-203)||(24373700-24373739)
chr6 (164-230)||(8138448-8138513)
chr6 (165-203)||(16390461-16390499)
chr6 (163-233)||(27907940-27908009)
chr6 (165-234)||(8917601-8917670)
chr6 (164-205)||(20480617-20480658)
chr6 (175-203)||(291399-291427)
chr6 (163-203)||(1918447-1918487)
chr6 (163-203)||(10507517-10507557)
chr6 (163-203)||(12440695-12440735)
chr6 (167-203)||(24349576-24349612)
[»] chr4 (28 HSPs)
chr4 (164-234)||(7230282-7230351)
chr4 (164-203)||(12322705-12322744)
chr4 (175-234)||(32139341-32139400)
chr4 (175-233)||(47814252-47814309)
chr4 (163-203)||(21317327-21317367)
chr4 (163-203)||(28435237-28435277)
chr4 (163-234)||(5924651-5924721)
chr4 (175-234)||(7371549-7371607)
chr4 (164-203)||(11198360-11198399)
chr4 (164-203)||(17423167-17423206)
chr4 (164-203)||(20383520-20383559)
chr4 (163-234)||(32200790-32200861)
chr4 (163-234)||(38453267-38453337)
chr4 (164-203)||(49041971-49042010)
chr4 (165-203)||(6087779-6087817)
chr4 (176-234)||(19731131-19731189)
chr4 (165-203)||(27871369-27871407)
chr4 (175-233)||(49308823-49308880)
chr4 (170-203)||(675950-675983)
chr4 (163-203)||(1701641-1701681)
chr4 (175-203)||(11949764-11949792)
chr4 (175-203)||(19479478-19479506)
chr4 (164-196)||(20016753-20016785)
chr4 (175-203)||(20799395-20799423)
chr4 (163-203)||(34042272-34042312)
chr4 (175-203)||(44815973-44816001)
chr4 (175-203)||(54294423-54294451)
chr4 (163-199)||(54857604-54857640)
[»] chr2 (20 HSPs)
chr2 (164-234)||(35456810-35456880)
chr2 (163-203)||(44810737-44810777)
chr2 (164-203)||(25186232-25186271)
chr2 (163-203)||(10735820-10735860)
chr2 (163-203)||(27848190-27848230)
chr2 (163-203)||(29544659-29544699)
chr2 (163-203)||(35820290-35820330)
chr2 (164-203)||(20565065-20565104)
chr2 (164-203)||(22571855-22571894)
chr2 (164-203)||(31543044-31543083)
chr2 (164-203)||(36359346-36359385)
chr2 (165-203)||(30089081-30089119)
chr2 (165-203)||(30125685-30125723)
chr2 (164-205)||(7645704-7645745)
chr2 (167-199)||(10811104-10811136)
chr2 (163-203)||(24592835-24592875)
chr2 (163-203)||(27411124-27411164)
chr2 (163-203)||(30243282-30243322)
chr2 (175-203)||(31815888-31815916)
chr2 (175-203)||(42791327-42791355)
[»] chr3 (18 HSPs)
chr3 (164-233)||(35863803-35863871)
chr3 (163-203)||(913589-913629)
chr3 (168-203)||(48656893-48656928)
chr3 (163-199)||(35210120-35210156)
chr3 (163-203)||(38130948-38130988)
chr3 (163-203)||(41817531-41817571)
chr3 (164-203)||(48849753-48849792)
chr3 (164-234)||(27185479-27185548)
chr3 (164-234)||(55126008-55126077)
chr3 (163-200)||(20906469-20906506)
chr3 (163-203)||(3755371-3755411)
chr3 (163-203)||(4601876-4601916)
chr3 (163-203)||(11358266-11358306)
chr3 (175-203)||(16663237-16663265)
chr3 (163-199)||(25340913-25340949)
chr3 (175-203)||(34899129-34899157)
chr3 (167-199)||(38034802-38034834)
chr3 (175-203)||(45431980-45432008)
[»] chr1 (21 HSPs)
chr1 (163-203)||(34521179-34521219)
chr1 (164-203)||(34595904-34595943)
chr1 (176-234)||(563203-563260)
chr1 (168-234)||(26755618-26755683)
chr1 (177-234)||(19620578-19620634)
chr1 (165-206)||(19795107-19795148)
chr1 (175-231)||(8269369-8269424)
chr1 (175-234)||(5907801-5907859)
chr1 (164-206)||(6423751-6423793)
chr1 (163-233)||(29739340-29739409)
chr1 (164-202)||(49222849-49222887)
chr1 (175-203)||(2994790-2994818)
chr1 (163-203)||(3481593-3481633)
chr1 (175-203)||(3937523-3937551)
chr1 (167-203)||(12182882-12182918)
chr1 (178-234)||(12213995-12214050)
chr1 (175-203)||(12268985-12269013)
chr1 (167-199)||(15668534-15668566)
chr1 (175-203)||(25533005-25533033)
chr1 (163-203)||(32950750-32950790)
chr1 (163-203)||(39252135-39252175)
[»] chr8 (21 HSPs)
chr8 (163-203)||(12748933-12748973)
chr8 (163-203)||(32051521-32051561)
chr8 (163-203)||(33105423-33105463)
chr8 (164-203)||(6447221-6447260)
chr8 (175-234)||(10752410-10752469)
chr8 (176-231)||(24195254-24195308)
chr8 (163-234)||(27587223-27587293)
chr8 (164-199)||(40679719-40679754)
chr8 (165-203)||(8717466-8717504)
chr8 (164-205)||(26638204-26638245)
chr8 (166-203)||(44794925-44794962)
chr8 (164-196)||(10297671-10297703)
chr8 (175-203)||(12800901-12800929)
chr8 (163-203)||(13357430-13357470)
chr8 (163-203)||(15438485-15438525)
chr8 (163-203)||(15529789-15529829)
chr8 (163-203)||(19260568-19260608)
chr8 (163-199)||(24838159-24838195)
chr8 (163-199)||(25136833-25136869)
chr8 (175-203)||(30176420-30176448)
chr8 (175-203)||(32421601-32421629)
[»] scaffold1127 (1 HSPs)
scaffold1127 (168-203)||(1159-1194)
[»] scaffold0983 (1 HSPs)
scaffold0983 (167-234)||(3308-3374)
[»] scaffold0262 (1 HSPs)
scaffold0262 (164-203)||(15920-15959)
[»] scaffold1149 (1 HSPs)
scaffold1149 (167-203)||(2364-2400)


Alignment Details
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 145578 - 145519
Alignment:
Q  175 ggtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagctc 234  Q
    |||||||||||||||||||||||||||||||||||||| |||  ||||||| ||||||||    
T  145578 ggtttgaaccccggaccttgcatatattaatgtgttgtccttaccaactgaactaagctc 145519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 203
Target Start/End: Original strand, 42095934 - 42095972
Alignment:
Q  165 tggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  42095934 tggtggcagaggtttgaaccccggaccttgcatatatta 42095972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 3830139 - 3830100
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||| ||||||||||| |||||||||||||||||    
T  3830139 gtggtggctggggtttgaaccctggaccttgcatatatta 3830100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 16577850 - 16577889
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    |||||||| |||||||||||||| ||||||||||||||||    
T  16577850 gtggtggccgaggtttgaaccccagaccttgcatatatta 16577889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 16587812 - 16587773
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    |||||||| |||||||||||||| ||||||||||||||||    
T  16587812 gtggtggccgaggtttgaaccccagaccttgcatatatta 16587773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 27462426 - 27462465
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  27462426 gtggtggccggggtttgaaccccggaccttgcatatatta 27462465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 42753517 - 42753556
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  42753517 gtggtggctggagtttgaaccccggaccttgcatatatta 42753556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 203
Target Start/End: Complemental strand, 7670496 - 7670466
Alignment:
Q  173 gaggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||||||||||||||||||||||||    
T  7670496 gaggtttgaaccccggaccttgcatatatta 7670466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 18714508 - 18714451
Alignment:
Q  175 ggtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagct 233  Q
    |||||||||||||||||||||||||||| |||  |||| |||  |||||||||||||||    
T  18714508 ggtttgaaccccggaccttgcatatatt-atgcattgtccttaccaactgagctaagct 18714451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 39926536 - 39926597
Alignment:
Q  172 tgaggtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagctc 234  Q
    |||||||||||||||| || ||||||||||| |||  |||| ||| |||||||||||||||||    
T  39926536 tgaggtttgaaccccgaacattgcatatatt-atgcattgtccttatcaactgagctaagctc 39926597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 5458070 - 5458130
Alignment:
Q  173 gaggtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagctc 234  Q
    |||||||||| ||| ||||||||||||||| |||  |||| ||| |||||||||||||||||    
T  5458070 gaggtttgaatcccagaccttgcatatatt-atgcattgttcttatcaactgagctaagctc 5458130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 10244787 - 10244759
Alignment:
Q  175 ggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||||||||||||||||||||||    
T  10244787 ggtttgaaccccggaccttgcatatatta 10244759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 19416586 - 19416550
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatat 199  Q
    ||||||||| | |||||||||||||||||||||||||    
T  19416586 ggtggtggccggggtttgaaccccggaccttgcatat 19416550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 19599205 - 19599177
Alignment:
Q  175 ggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||||||||||||||||||||||    
T  19599205 ggtttgaaccccggaccttgcatatatta 19599177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 20085760 - 20085788
Alignment:
Q  175 ggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||||||||||||||||||||||    
T  20085760 ggtttgaaccccggaccttgcatatatta 20085788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 23147350 - 23147322
Alignment:
Q  175 ggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||||||||||||||||||||||    
T  23147350 ggtttgaaccccggaccttgcatatatta 23147322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 4009939 - 4009868
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagctc 234  Q
    ||||||||| | |||||||||||||| |||||||||||||||||  |||| |||  ||||||||||||||||    
T  4009939 ggtggtggccggggtttgaaccccggcccttgcatatattaatgcattgtccttaccaactgagctaagctc 4009868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 22522790 - 22522830
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  22522790 ggtggtggccggggtttgaaccccggaccttgcatatatta 22522830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 32200451 - 32200506
Alignment:
Q  178 ttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagctc 234  Q
    ||||||||||||||||||||||||| |||  |||| | |||||||||||||||||||    
T  32200451 ttgaaccccggaccttgcatatatt-atgcattgtccctgtcaactgagctaagctc 32200506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 6624848 - 6624778
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagctc 234  Q
    ||||||||| | |||| ||||||||||||||||||||||| |||  |||| | || ||||||||||||||||    
T  6624848 ggtggtggccggggttcgaaccccggaccttgcatatatt-atgcattgtccatgccaactgagctaagctc 6624778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 27086149 - 27086110
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||| ||||||||||| |||||||||||||||||    
T  27086149 gtggtggctggggtttgaaccctggaccttgcatatatta 27086110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 40715939 - 40715978
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  40715939 gtggtggccggggtttgaaccccggaccttgcatatatta 40715978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 25979914 - 25979876
Alignment:
Q  165 tggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  25979914 tggtggccgaggtttgaaccccggaccttgcatacatta 25979876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 39782947 - 39782886
Alignment:
Q  173 gaggtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagctc 234  Q
    |||||| |||||||||| |||||||||||| ||||||| |  || ||||||||| |||||||    
T  39782947 gaggttggaaccccggatcttgcatatatttatgtgttatctttatcaactgagataagctc 39782886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 4763183 - 4763215
Alignment:
Q  171 ctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||||||||||||||||| |||||||||    
T  4763183 ctgaggtttgaaccccggaccttacatatatta 4763215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 6489079 - 6489039
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||| | |||||||||||| ||||||||||||||||    
T  6489079 ggtggtggccggggtttgaaccccagaccttgcatatatta 6489039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 13864404 - 13864376
Alignment:
Q  175 ggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||||||||||||||||||||||    
T  13864404 ggtttgaaccccggaccttgcatatatta 13864376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 16036886 - 16036827
Alignment:
Q  176 gtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagctctc 236  Q
    |||||||||  |||||||||||||||| |||| |||| | || ||||||||||||||||||    
T  16036886 gtttgaaccatggaccttgcatatatt-atgtattgtccatgccaactgagctaagctctc 16036827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 20721110 - 20721082
Alignment:
Q  175 ggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||||||||||||||||||||||    
T  20721110 ggtttgaaccccggaccttgcatatatta 20721082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 42473954 - 42473926
Alignment:
Q  175 ggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||||||||||||||||||||||    
T  42473954 ggtttgaaccccggaccttgcatatatta 42473926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 231
Target Start/End: Complemental strand, 33824951 - 33824886
Alignment:
Q  165 tggtggctgaggtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaag 231  Q
    ||||||| |||||||||||||||||||||||||||||| |||  |||| ||| ||||||||||||||    
T  33824951 tggtggccgaggtttgaaccccggaccttgcatatatt-atgcattgtccttatcaactgagctaag 33824886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 27928098 - 27928135
Alignment:
Q  166 ggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  27928098 ggtggctgaggtttgaatcccggaccttgcatatatta 27928135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 17151308 - 17151268
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||| |||||||||||||| ||||||||||||||||    
T  17151308 ggtggtggccgaggtttgaaccccagaccttgcatatatta 17151268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 26548323 - 26548283
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||||| ||||||||||||| |||||||||||||||    
T  26548323 ggtggtggctggggtttgaaccccgaaccttgcatatatta 26548283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 8569780 - 8569741
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  8569780 gtggtggccggggtttgaaccccggaccttgcatatatta 8569741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 15187123 - 15187065
Alignment:
Q  175 ggtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagctc 234  Q
    |||||||||| ||||||||||||||||| |||  |||||||| ||| |||||||||||||    
T  15187123 ggtttgaacctcggaccttgcatatatt-atgcattgtacttatcagctgagctaagctc 15187065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 15473483 - 15473541
Alignment:
Q  175 ggtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagctc 234  Q
    |||||||||| ||||||||||||||||| |||  |||||||| ||| |||||||||||||    
T  15473483 ggtttgaacctcggaccttgcatatatt-atgcattgtacttatcagctgagctaagctc 15473541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 24373700 - 24373739
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||| |||||||||||| ||||||||||||||||    
T  24373700 gtggtggctggggtttgaacccctgaccttgcatatatta 24373739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 8138448 - 8138513
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaa 230  Q
    ||||||| ||||||||||||||| |||||| |||||||| |||  |||| ||| |||||||||||||    
T  8138448 gtggtggttgaggtttgaaccccagaccttacatatatt-atgcattgttcttatcaactgagctaa 8138513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 16390499 - 16390461
Alignment:
Q  165 tggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  16390499 tggtggccgaggtttgaaccccggaccttacatatatta 16390461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 233
Target Start/End: Original strand, 27907940 - 27908009
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagct 233  Q
    ||||||||| | |||||||||||| |||||||||||| || |||  || | ||||||||||||||||||||    
T  27907940 ggtggtggccggggtttgaaccccagaccttgcatat-tttatgcattatccttgtcaactgagctaagct 27908009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 8917670 - 8917601
Alignment:
Q  165 tggtggctgaggtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagctc 234  Q
    ||||||| | |||||||||||| |||||| ||||||||||||| |||| |||   ||||||| |||||||    
T  8917670 tggtggccggggtttgaaccccagaccttacatatattaatgtattgtccttactaactgagttaagctc 8917601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 20480617 - 20480658
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatattaat 205  Q
    |||||||| ||| ||| |||||||||||||||||||||||||    
T  20480617 gtggtggccgagatttaaaccccggaccttgcatatattaat 20480658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 291427 - 291399
Alignment:
Q  175 ggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||||||||||||||||||||||    
T  291427 ggtttgaaccccggaccttgcatatatta 291399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 1918447 - 1918487
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||||| ||| ||||| ||||||||||||||||||    
T  1918447 ggtggtggctgatgttcgaacctcggaccttgcatatatta 1918487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 10507517 - 10507557
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||| || ||||||||||| ||||||||||||||||    
T  10507517 ggtggtggccgatgtttgaaccccagaccttgcatatatta 10507557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 12440735 - 12440695
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||  |||||||||||||| ||||||||||||||||    
T  12440735 ggtggtggtcgaggtttgaaccccagaccttgcatatatta 12440695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 24349612 - 24349576
Alignment:
Q  167 gtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  24349612 gtggctgaggtttgaaccccgaaccttgcaaatatta 24349576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 7230351 - 7230282
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagctc 234  Q
    |||||||| |||||||||||||||||||||||||||||| |||  |||| |||  ||||||||||||||||    
T  7230351 gtggtggccgaggtttgaaccccggaccttgcatatatt-atgcattgtccttaccaactgagctaagctc 7230282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 12322744 - 12322705
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  12322744 gtggtggctgaggtttgaaccccggaacttgcatatatta 12322705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 32139400 - 32139341
Alignment:
Q  175 ggtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagctc 234  Q
    |||| ||||||||||||||||||||||| |||| |||| | | |||||||||||||||||    
T  32139400 ggttcgaaccccggaccttgcatatatttatgtattgtccctatcaactgagctaagctc 32139341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 47814252 - 47814309
Alignment:
Q  175 ggtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagct 233  Q
    |||||||||||||||||||||||||||| ||||||||| | |  |||||||||||||||    
T  47814252 ggtttgaaccccggaccttgcatatatt-atgtgttgtccataccaactgagctaagct 47814309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 21317327 - 21317367
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    |||||||| ||||||||||||||| ||||||||||||||||    
T  21317327 ggtggtggttgaggtttgaacccctgaccttgcatatatta 21317367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 28435237 - 28435277
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||||| ||||||||||||| |||||||||||||||    
T  28435237 ggtggtggctggggtttgaaccccgaaccttgcatatatta 28435277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 5924721 - 5924651
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagctc 234  Q
    ||||||||  ||||||||||||||||||||| |||||||| |||| |||| | |  ||||||||||||||||    
T  5924721 ggtggtggtcgaggtttgaaccccggaccttccatatatt-atgtattgtccatagcaactgagctaagctc 5924651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 7371549 - 7371607
Alignment:
Q  175 ggtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagctc 234  Q
    |||| ||||||||||||||||||||||| |||| |||| ||| ||||||||| |||||||    
T  7371549 ggttcgaaccccggaccttgcatatatt-atgtattgtccttatcaactgagttaagctc 7371607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 11198399 - 11198360
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  11198399 gtggtggccggggtttgaaccccggaccttgcatatatta 11198360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 17423167 - 17423206
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  17423167 gtggtggctggagtttgaaccccggaccttgcatatatta 17423206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 20383559 - 20383520
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  20383559 gtggtggatggggtttgaaccccggaccttgcatatatta 20383520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 32200790 - 32200861
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagctc 234  Q
    ||||||| || ||||| |||||||| |||||||||||||| ||||||| |  || ||||||||| |||||||    
T  32200790 ggtggtgtctaaggttcgaaccccgaaccttgcatatatttatgtgttatctttatcaactgagataagctc 32200861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 38453337 - 38453267
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagctc 234  Q
    ||||||||||| |||| |||||| |||||||||||||||| |||  |||| | || ||||||||||||||||    
T  38453337 ggtggtggctggggttcgaaccctggaccttgcatatatt-atgcattgtccatgccaactgagctaagctc 38453267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 49041971 - 49042010
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  49041971 gtggtggccggggtttgaaccccggaccttgcatatatta 49042010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 6087817 - 6087779
Alignment:
Q  165 tggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||| |||||||||||| ||||||||||||||||    
T  6087817 tggtggctggggtttgaaccccagaccttgcatatatta 6087779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 19731131 - 19731189
Alignment:
Q  176 gtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagctc 234  Q
    |||||||||||| ||||||||||||||||||  |||| |||  ||| ||||||||||||    
T  19731131 gtttgaaccccgaaccttgcatatattaatgcattgtccttaccaattgagctaagctc 19731189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 203
Target Start/End: Original strand, 27871369 - 27871407
Alignment:
Q  165 tggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  27871369 tggtggctgaagtttgaacctcggaccttgcatatatta 27871407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 49308880 - 49308823
Alignment:
Q  175 ggtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagct 233  Q
    |||| ||||||| |||||||||||||||| ||  |||| ||||||||||||||||||||    
T  49308880 ggttcgaaccccagaccttgcatatatta-tgcattgtccttgtcaactgagctaagct 49308823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 675983 - 675950
Alignment:
Q  170 gctgaggtttgaaccccggaccttgcatatatta 203  Q
    |||| |||||||||||||||||||||||||||||    
T  675983 gctggggtttgaaccccggaccttgcatatatta 675950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 1701681 - 1701641
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||| |||||||| ||||| ||||||||||||||||||    
T  1701681 ggtggtgtctgaggttcgaacctcggaccttgcatatatta 1701641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 11949764 - 11949792
Alignment:
Q  175 ggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||||||||||||||||||||||    
T  11949764 ggtttgaaccccggaccttgcatatatta 11949792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 19479478 - 19479506
Alignment:
Q  175 ggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||||||||||||||||||||||    
T  19479478 ggtttgaaccccggaccttgcatatatta 19479506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 20016753 - 20016785
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgca 196  Q
    |||||||||| ||||||||||||||||||||||    
T  20016753 gtggtggctggggtttgaaccccggaccttgca 20016785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 20799395 - 20799423
Alignment:
Q  175 ggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||||||||||||||||||||||    
T  20799395 ggtttgaaccccggaccttgcatatatta 20799423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 34042312 - 34042272
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||  ||||||||||||||| |||||||||||||||    
T  34042312 ggtggtggtcgaggtttgaaccccgaaccttgcatatatta 34042272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 44816001 - 44815973
Alignment:
Q  175 ggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||||||||||||||||||||||    
T  44816001 ggtttgaaccccggaccttgcatatatta 44815973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 54294423 - 54294451
Alignment:
Q  175 ggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||||||||||||||||||||||    
T  54294423 ggtttgaaccccggaccttgcatatatta 54294451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 54857604 - 54857640
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatat 199  Q
    ||||||||| | |||||||||||||||||||||||||    
T  54857604 ggtggtggccggggtttgaaccccggaccttgcatat 54857640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 234
Target Start/End: Original strand, 35456810 - 35456880
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagctc 234  Q
    ||||||| || ||||||||||||| ||||||||||||||||||  |||| |||  ||||||||||||||||    
T  35456810 gtggtggttggggtttgaaccccgaaccttgcatatattaatgcattgttcttaccaactgagctaagctc 35456880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 44810777 - 44810737
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  44810777 ggtggtggctggggtttgaaccccggaccttgcatatatta 44810737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 25186232 - 25186271
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  25186232 gtggtggctggggtttgaaccccggaccttgcatatatta 25186271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 10735820 - 10735860
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  10735820 ggtggtggccggggtttgaaccccggaccttgcatatatta 10735860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 27848230 - 27848190
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  27848230 ggtggtggccggggtttgaaccccggaccttgcatatatta 27848190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 29544699 - 29544659
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  29544699 ggtggtggccggggtttgaaccccggaccttgcatatatta 29544659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 35820290 - 35820330
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||| ||||||||||||||||||||||||| |||||    
T  35820290 ggtggtggccgaggtttgaaccccggaccttgcatgtatta 35820330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 20565065 - 20565104
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  20565065 gtggtggttggggtttgaaccccggaccttgcatatatta 20565104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 22571855 - 22571894
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||||| |||||||||||||| ||||||||||||    
T  22571855 gtggtggctgagatttgaaccccggacattgcatatatta 22571894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 31543083 - 31543044
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  31543083 gtggtggttggggtttgaaccccggaccttgcatatatta 31543044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 36359385 - 36359346
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||  ||||||||||||||||||||||||||||||    
T  36359385 gtggtggccaaggtttgaaccccggaccttgcatatatta 36359346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 30089119 - 30089081
Alignment:
Q  165 tggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  30089119 tggtggccgaggtttgaaccccggaccttgtatatatta 30089081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 30125723 - 30125685
Alignment:
Q  165 tggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  30125723 tggtggccgaggtttgaaccccggaccttgtatatatta 30125685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 7645704 - 7645745
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatattaat 205  Q
    |||||||| ||||||||||||| |||| ||||||||||||||    
T  7645704 gtggtggccgaggtttgaaccctggactttgcatatattaat 7645745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 10811136 - 10811104
Alignment:
Q  167 gtggctgaggtttgaaccccggaccttgcatat 199  Q
    ||||||| |||||||||||||||||||||||||    
T  10811136 gtggctggggtttgaaccccggaccttgcatat 10811104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 24592835 - 24592875
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||| | |||||||||||| ||||||||||||||||    
T  24592835 ggtggtggccggggtttgaaccccagaccttgcatatatta 24592875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 27411164 - 27411124
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||| | |||| ||||||||||||||||||||||||    
T  27411164 ggtggtggccggggttcgaaccccggaccttgcatatatta 27411124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 30243322 - 30243282
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||| ||||||||||||||| |||||| ||||||||    
T  30243322 ggtggtggccgaggtttgaaccccgaaccttgtatatatta 30243282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 31815888 - 31815916
Alignment:
Q  175 ggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||||||||||||||||||||||    
T  31815888 ggtttgaaccccggaccttgcatatatta 31815916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 42791355 - 42791327
Alignment:
Q  175 ggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||||||||||||||||||||||    
T  42791355 ggtttgaaccccggaccttgcatatatta 42791327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 35863803 - 35863871
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagct 233  Q
    |||||||| |||||||||||||| ||||||||||||||| |||| |||| |||  |||||||||||||||    
T  35863803 gtggtggccgaggtttgaaccccagaccttgcatatatt-atgtattgtccttaccaactgagctaagct 35863871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 913589 - 913629
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  913589 ggtggtggcagaggtttgaaccccggaccttgcatatatta 913629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 203
Target Start/End: Original strand, 48656893 - 48656928
Alignment:
Q  168 tggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||||||||||||||||||||||||||||||    
T  48656893 tggctgaggtttgaaccccggaccttgcatatatta 48656928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 35210120 - 35210156
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatat 199  Q
    ||||||||| |||||||||||||||||||||||||||    
T  35210120 ggtggtggccgaggtttgaaccccggaccttgcatat 35210156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 38130948 - 38130988
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  38130948 ggtggtggccggggtttgaaccccggaccttgcatatatta 38130988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 41817571 - 41817531
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||||  |||||||||||||||||||||||||||||    
T  41817571 ggtggtggctagggtttgaaccccggaccttgcatatatta 41817531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 48849753 - 48849792
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  48849753 gtggtggccggggtttgaaccccggaccttgcatatatta 48849792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 27185548 - 27185479
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagctc 234  Q
    |||||||  |||||||||||||| ||||||||||||||| |||| |||| | |  ||||||||||||||||    
T  27185548 gtggtggtcgaggtttgaaccccagaccttgcatatatt-atgtattgtccctaccaactgagctaagctc 27185479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 55126077 - 55126008
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagctc 234  Q
    |||||| ||| |||||||||| || |||||||||||||| |||| |||| ||  |||||||||||||||||    
T  55126077 gtggtgtctggggtttgaacctcgaaccttgcatatatt-atgtattgtcctcatcaactgagctaagctc 55126008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 200
Target Start/End: Original strand, 20906469 - 20906506
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatata 200  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  20906469 ggtggtgtctggggtttgaaccccggaccttgcatata 20906506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 3755411 - 3755371
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||| ||||||| ||||| |||||||||||||||||    
T  3755411 ggtggtggccgaggtttaaaccctggaccttgcatatatta 3755371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 4601916 - 4601876
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||| | ||||||||||||||||||||||| |||||    
T  4601916 ggtggtggccggggtttgaaccccggaccttgcatttatta 4601876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 11358306 - 11358266
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||| | ||||||||||||||| |||||||||||||    
T  11358306 ggtggtggccggggtttgaaccccggatcttgcatatatta 11358266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 16663237 - 16663265
Alignment:
Q  175 ggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||||||||||||||||||||||    
T  16663237 ggtttgaaccccggaccttgcatatatta 16663265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 25340913 - 25340949
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatat 199  Q
    ||||||||| | |||||||||||||||||||||||||    
T  25340913 ggtggtggccggggtttgaaccccggaccttgcatat 25340949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 34899157 - 34899129
Alignment:
Q  175 ggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||||||||||||||||||||||    
T  34899157 ggtttgaaccccggaccttgcatatatta 34899129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 38034802 - 38034834
Alignment:
Q  167 gtggctgaggtttgaaccccggaccttgcatat 199  Q
    ||||| |||||||||||||||||||||||||||    
T  38034802 gtggccgaggtttgaaccccggaccttgcatat 38034834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 45432008 - 45431980
Alignment:
Q  175 ggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||||||||||||||||||||||    
T  45432008 ggtttgaaccccggaccttgcatatatta 45431980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 34521179 - 34521219
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  34521179 ggtggtggccgaggtttgaaccccggaccttgcatatatta 34521219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 34595943 - 34595904
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  34595943 gtggtggccgaggtttgaaccccggaccttgcatatatta 34595904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 563260 - 563203
Alignment:
Q  176 gtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagctc 234  Q
    |||||||| |||||||||||||||||| |||| |||| ||| |||||||||||||||||    
T  563260 gtttgaactccggaccttgcatatatt-atgttttgtccttatcaactgagctaagctc 563203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 26755683 - 26755618
Alignment:
Q  168 tggctgaggtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagctc 234  Q
    |||| |||||||||||||||||||||||||||| |||||  |||| | | |||||||||||||||||    
T  26755683 tggccgaggtttgaaccccggaccttgcatata-taatgcattgtccatatcaactgagctaagctc 26755618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 19620634 - 19620578
Alignment:
Q  177 tttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagctc 234  Q
    |||||||||||||||||||||||||| |||| |||| |||  ||||||||||||||||    
T  19620634 tttgaaccccggaccttgcatatatt-atgtattgtccttaccaactgagctaagctc 19620578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 19795107 - 19795148
Alignment:
Q  165 tggtggctgaggtttgaaccccggaccttgcatatattaatg 206  Q
    ||||||| | ||||||||||||||||||||||||||||||||    
T  19795107 tggtggccggggtttgaaccccggaccttgcatatattaatg 19795148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 8269369 - 8269424
Alignment:
Q  175 ggtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaag 231  Q
    |||||||||||||||||||||||||||| |||| |||| |||  |||||||||||||    
T  8269369 ggtttgaaccccggaccttgcatatatt-atgtattgtccttaccaactgagctaag 8269424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 5907859 - 5907801
Alignment:
Q  175 ggtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagctc 234  Q
    ||||||||||| |||||||||||||||| |||  |||| |||| ||||||||||||||||    
T  5907859 ggtttgaaccctggaccttgcatatatt-atgcattgtccttgccaactgagctaagctc 5907801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 6423751 - 6423793
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatattaatg 206  Q
    |||||||| | ||||||||||||||||||||||||||| ||||    
T  6423751 gtggtggccggggtttgaaccccggaccttgcatatataaatg 6423793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 29739409 - 29739340
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagct 233  Q
    |||||| || ||||||||||||||||||||||||||| || |||  |||| |||  |||||||||||||||    
T  29739409 ggtggtagccgaggtttgaaccccggaccttgcatat-tttatgcattgtccttaccaactgagctaagct 29739340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 202
Target Start/End: Complemental strand, 49222887 - 49222849
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatatt 202  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  49222887 gtggtggctggagtttgaaccccggaccttgcatatatt 49222849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 2994818 - 2994790
Alignment:
Q  175 ggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||||||||||||||||||||||    
T  2994818 ggtttgaaccccggaccttgcatatatta 2994790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 3481633 - 3481593
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||| | |||||||||||| ||||||||||||||||    
T  3481633 ggtggtggccggggtttgaaccccagaccttgcatatatta 3481593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 3937523 - 3937551
Alignment:
Q  175 ggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||||||||||||||||||||||    
T  3937523 ggtttgaaccccggaccttgcatatatta 3937551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 12182918 - 12182882
Alignment:
Q  167 gtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||||||||| || |||||||||||||||||    
T  12182918 gtggctgaggtttgaatccaggaccttgcatatatta 12182882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 12214050 - 12213995
Alignment:
Q  178 ttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagctc 234  Q
    ||||||||| ||||||||||||||| |||| |||| | | |||||||||||||||||    
T  12214050 ttgaaccccagaccttgcatatatt-atgtattgttcctatcaactgagctaagctc 12213995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 12268985 - 12269013
Alignment:
Q  175 ggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||||||||||||||||||||||    
T  12268985 ggtttgaaccccggaccttgcatatatta 12269013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 15668566 - 15668534
Alignment:
Q  167 gtggctgaggtttgaaccccggaccttgcatat 199  Q
    ||||||| |||||||||||||||||||||||||    
T  15668566 gtggctggggtttgaaccccggaccttgcatat 15668534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 25533033 - 25533005
Alignment:
Q  175 ggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||||||||||||||||||||||    
T  25533033 ggtttgaaccccggaccttgcatatatta 25533005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 32950750 - 32950790
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||  ||||||||||| |||||||||||||||||||    
T  32950750 ggtggtggtcgaggtttgaactccggaccttgcatatatta 32950790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 39252135 - 39252175
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    |||||||| ||  ||||||||||||||||||||||||||||    
T  39252135 ggtggtggttggagtttgaaccccggaccttgcatatatta 39252175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 12748973 - 12748933
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  12748973 ggtggtggccggggtttgaaccccggaccttgcatatatta 12748933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 32051521 - 32051561
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  32051521 ggtggtggccggggtttgaaccccggaccttgcatatatta 32051561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 33105463 - 33105423
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||| ||||| |||||||||||||||||||||||||||||    
T  33105463 ggtggaggctggggtttgaaccccggaccttgcatatatta 33105423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 6447260 - 6447221
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  6447260 gtggtggctgagatttgaactccggaccttgcatatatta 6447221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 10752469 - 10752410
Alignment:
Q  175 ggtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagctc 234  Q
    |||||||||||| ||||||| |||||| ||||| |||| |||  ||||||||||||||||    
T  10752469 ggtttgaaccccagaccttgaatatatcaatgttttgtccttaccaactgagctaagctc 10752410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 231
Target Start/End: Complemental strand, 24195308 - 24195254
Alignment:
Q  176 gtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaag 231  Q
    ||||||||||||||||||||||||||| |||| |||| | | ||||||||||||||    
T  24195308 gtttgaaccccggaccttgcatatatt-atgtattgttcatatcaactgagctaag 24195254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 27587293 - 27587223
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagctc 234  Q
    ||||||||| | |||||||||||||||||||||||||| | |||  |||| |||  ||||||||||||||||    
T  27587293 ggtggtggccggggtttgaaccccggaccttgcatata-tcatgcattgtccttaccaactgagctaagctc 27587223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 40679719 - 40679754
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatat 199  Q
    |||||||| |||||||||||||||||||||||||||    
T  40679719 gtggtggccgaggtttgaaccccggaccttgcatat 40679754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 203
Target Start/End: Original strand, 8717466 - 8717504
Alignment:
Q  165 tggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||| ||||||||||||||| |||||||||||||||    
T  8717466 tggtggccgaggtttgaaccccgaaccttgcatatatta 8717504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 26638204 - 26638245
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatattaat 205  Q
    ||||||||||||||| |||||||| || ||||||||||||||    
T  26638204 gtggtggctgaggttagaaccccgaacattgcatatattaat 26638245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 44794962 - 44794925
Alignment:
Q  166 ggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  44794962 ggtggccgaggtttgaactccggaccttgcatatatta 44794925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 10297703 - 10297671
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgca 196  Q
    |||||||||| ||||||||||||||||||||||    
T  10297703 gtggtggctggggtttgaaccccggaccttgca 10297671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 12800901 - 12800929
Alignment:
Q  175 ggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||||||||||||||||||||||    
T  12800901 ggtttgaaccccggaccttgcatatatta 12800929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 13357430 - 13357470
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||| |||||||||||| || |||||||||||||||    
T  13357430 ggtggtggccgaggtttgaacctcgtaccttgcatatatta 13357470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 15438525 - 15438485
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||||||| ||  |||||||||||||||||||||||    
T  15438525 ggtggtggctgagattcaaaccccggaccttgcatatatta 15438485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 15529829 - 15529789
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||||||| ||  |||||||||||||||||||||||    
T  15529829 ggtggtggctgagattcaaaccccggaccttgcatatatta 15529789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 19260568 - 19260608
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||| | ||||||||||||||||||| |||||||||    
T  19260568 ggtggtggccggggtttgaaccccggaccttacatatatta 19260608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 24838159 - 24838195
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatat 199  Q
    ||||||||| | |||||||||||||||||||||||||    
T  24838159 ggtggtggccggggtttgaaccccggaccttgcatat 24838195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 25136833 - 25136869
Alignment:
Q  163 ggtggtggctgaggtttgaaccccggaccttgcatat 199  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  25136833 ggtggtggccgaggtttgaacctcggaccttgcatat 25136869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 30176420 - 30176448
Alignment:
Q  175 ggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||||||||||||||||||||||    
T  30176420 ggtttgaaccccggaccttgcatatatta 30176448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 32421629 - 32421601
Alignment:
Q  175 ggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||||||||||||||||||||||    
T  32421629 ggtttgaaccccggaccttgcatatatta 32421601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1127 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1127
Description:

Target: scaffold1127; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 203
Target Start/End: Original strand, 1159 - 1194
Alignment:
Q  168 tggctgaggtttgaaccccggaccttgcatatatta 203  Q
    |||||| |||||||||||||||||||||||||||||    
T  1159 tggctggggtttgaaccccggaccttgcatatatta 1194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0983 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0983
Description:

Target: scaffold0983; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 3308 - 3374
Alignment:
Q  167 gtggctgaggtttgaaccccggaccttgcatatattaatgtgttgtacttgtcaactgagctaagctc 234  Q
    ||||| ||||||||||||||| |||||||||||||| |||| |||| |||  ||||||||||| ||||    
T  3308 gtggccgaggtttgaaccccgaaccttgcatatatt-atgtcttgtccttaccaactgagctatgctc 3374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 15920 - 15959
Alignment:
Q  164 gtggtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    |||||||||| |||||||||||| ||||||||||||||||    
T  15920 gtggtggctggggtttgaaccccagaccttgcatatatta 15959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1149 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 2400 - 2364
Alignment:
Q  167 gtggctgaggtttgaaccccggaccttgcatatatta 203  Q
    ||||||||||||||||||||  |||||||||||||||    
T  2400 gtggctgaggtttgaaccccaaaccttgcatatatta 2364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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