View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14165_low_19 (Length: 235)

Name: NF14165_low_19
Description: NF14165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14165_low_19
NF14165_low_19
[»] chr6 (10 HSPs)
chr6 (21-212)||(11170095-11170286)
chr6 (21-214)||(11208917-11209110)
chr6 (85-202)||(11275543-11275660)
chr6 (132-194)||(11155921-11155983)
chr6 (132-194)||(11196374-11196436)
chr6 (132-194)||(11199364-11199426)
chr6 (142-194)||(11315188-11315240)
chr6 (132-194)||(11160788-11160850)
chr6 (132-194)||(11241878-11241940)
chr6 (139-198)||(11132652-11132711)
[»] scaffold1207 (1 HSPs)
scaffold1207 (154-207)||(546-599)


Alignment Details
Target: chr6 (Bit Score: 131; Significance: 4e-68; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 21 - 212
Target Start/End: Original strand, 11170095 - 11170286
Alignment:
Q  21 cctaggaattattccgcccatgaggccccctttcatattaattccaaggaccaaaggatggacatccctcaatgtcaaatctttaatcttttcccaaann 120  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||  |||||||| ||||||||||||||||||||||| || |||||| ||||      
T  11170095 cctaggaattattacgcccatgaggtcccctttcatattaattccaagggacaaaggattgacatccctcaatgtcaaatcttgaaacttttcacaaatc 11170194  T
Q  121 nnnnnacttgctataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataactccgtcccactaccctt 212  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  11170195 gcaccacttgctataaaagcatggacagcagcgccatatgcaaccgcctcatctacattgatgtttttacataactccgtcccactaccctt 11170286  T

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Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 21 - 214
Target Start/End: Original strand, 11208917 - 11209110
Alignment:
Q  21 cctaggaattattccgcccatgaggccccctttcatattaattccaaggaccaaaggatggacatccctcaatgtcaaatctttaatcttttcccaaann 120  Q
    ||||||||||||| ||| ||||||||||||||| |||||||||||||||  |||||||| ||| ||||||||||||||||||| || |||||| ||||      
T  11208917 cctaggaattattacgctcatgaggccccctttgatattaattccaagggacaaaggattgacttccctcaatgtcaaatcttgaaacttttcacaaatc 11209016  T
Q  121 nnnnnacttgctataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataactccgtcccactaccctttt 214  Q
         ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11209017 tcaccacttgctataaaagcatggacagcagcgccatatgcaactgcctcatctgcattgatgcttttacataactccgtcccactaccttttt 11209110  T

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Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 85 - 202
Target Start/End: Original strand, 11275543 - 11275660
Alignment:
Q  85 tccctcaatgtcaaatctttaatcttttcccaaannnnnnnacttgctataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgc 184  Q
    ||||||||||||||||||| || |||||| ||||       |||   |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11275543 tccctcaatgtcaaatcttgaaacttttcacaaagctcaccactcaatataaaagcatggatagcagcgccatatgcaaccgcctcatctgcattgatgc 11275642  T
Q  185 ttttacataactccgtcc 202  Q
    |||| ||||||| |||||    
T  11275643 ttttgcataacttcgtcc 11275660  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 11155921 - 11155983
Alignment:
Q  132 tataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataa 194  Q
    |||| ||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||    
T  11155921 tatagaagcatggacagcagcgccatatgccaccgcctcatcgacattgatgcttttgcataa 11155983  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 11196374 - 11196436
Alignment:
Q  132 tataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataa 194  Q
    |||| ||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||    
T  11196374 tatagaagcatggacagcagcgccatatgccaccgcctcatcgacattgatgcttttgcataa 11196436  T

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Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 11199364 - 11199426
Alignment:
Q  132 tataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataa 194  Q
    |||| ||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||    
T  11199364 tatagaagcatggacagcagcgccatatgccaccgcctcatcgacattgatgcttttgcataa 11199426  T

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Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 11315240 - 11315188
Alignment:
Q  142 tggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataa 194  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||| |||||    
T  11315240 tggacagcagcgccatatgcaaccgccttatcagcattgatgcttttgcataa 11315188  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 11160788 - 11160850
Alignment:
Q  132 tataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataa 194  Q
    |||| ||||||||||||||||||||||||| || ||||||||  ||||||||||||| |||||    
T  11160788 tatagaagcatggacagcagcgccatatgccactgcctcatcgacattgatgcttttgcataa 11160850  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 11241940 - 11241878
Alignment:
Q  132 tataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataa 194  Q
    |||| ||||||||||| ||||||||||||| || ||||||||  ||||||||||||| |||||    
T  11241940 tatagaagcatggacaacagcgccatatgccacagcctcatcgacattgatgcttttgcataa 11241878  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 11132652 - 11132711
Alignment:
Q  139 gcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataactcc 198  Q
    |||||||||||||| ||| ||||||  || ||||||||||| |||||||| |||||||||    
T  11132652 gcatggacagcagcaccacatgcaatagcttcatctgcatttatgcttttgcataactcc 11132711  T

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Target: scaffold1207 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 546 - 599
Alignment:
Q  154 ccatatgcaaccgcctcatctgcattgatgcttttacataactccgtcccacta 207  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||    
T  546 ccatatgcaaccgcctcatctgcattgatgcttttgcataacttcgtcctacta 599  T

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