View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14165_low_20 (Length: 228)

Name: NF14165_low_20
Description: NF14165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14165_low_20
NF14165_low_20
[»] chr1 (2 HSPs)
chr1 (1-212)||(52082862-52083073)
chr1 (1-212)||(52093064-52093269)
[»] chr7 (3 HSPs)
chr7 (1-52)||(10167444-10167495)
chr7 (1-52)||(10169900-10169951)
chr7 (1-52)||(10177425-10177476)
[»] chr3 (6 HSPs)
chr3 (1-35)||(33396786-33396820)
chr3 (1-35)||(33708804-33708838)
chr3 (1-35)||(37580607-37580641)
chr3 (1-34)||(33093715-33093748)
chr3 (1-61)||(514486-514546)
chr3 (9-61)||(51764201-51764253)
[»] chr4 (1 HSPs)
chr4 (1-61)||(547194-547254)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 52082862 - 52083073
Alignment:
Q  1 gccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaattagagttcttatcacaaaactttccaatatcactgtattccattatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  52082862 gccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaattagagttcttatcacaaaactttccaatatcactgcattccattatga 52082961  T
Q  101 tcttgctgaggaaaggacagttcctaactagtgacagcaaggttaattcagtgatattacaatggctaaggtttatagacagcaaactaccaagaaccgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52082962 tcttgctgaggaaaggacagttcctaactagtgacagcaaggttaattcagtgatattacaatggctaaggtttatagacagcaaactaccaagaaccgt 52083061  T
Q  201 agacaacccaac 212  Q
    ||||||||||||    
T  52083062 agacaacccaac 52083073  T

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Target: chr1; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 52093064 - 52093269
Alignment:
Q  1 gccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaattagagttcttatcacaaaactttccaatatcactgtattccattatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||| | |||||||||||||||||||||||| ||||         | |||    
T  52093064 gccaaatggagagacttcacttgagggtatacaacaaagtccatcaaacaattacaattcttatcacaaaactttccaataccact---------tctga 52093154  T
Q  101 tcttgctgaggaaaggacagttcctaactagtgacagcaaggttaattcagtgatat---tacaatggctaaggtttatagacagcaaactaccaagaac 197  Q
    ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||   ||||| |||||||||||||||||| |||| ||||||||||    
T  52093155 tctcgctgaggaaaggacagttcctaactagtgacaccaaggttaattcagtgatattggtacaagggctaaggtttatagacaccaaattaccaagaac 52093254  T
Q  198 cgtagacaacccaac 212  Q
    |  ||||||||||||    
T  52093255 caaagacaacccaac 52093269  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 10167495 - 10167444
Alignment:
Q  1 gccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaat 52  Q
    ||||||| ||||||||||| ||||||||||||| |||| ||| |||||||||    
T  10167495 gccaaatagagagacttcaattgagggtatacaccaaaatccggcaaagaat 10167444  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 10169951 - 10169900
Alignment:
Q  1 gccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaat 52  Q
    ||||||| ||||||||||| ||||||||||||| |||| ||| |||||||||    
T  10169951 gccaaatagagagacttcaattgagggtatacaccaaaatccggcaaagaat 10169900  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 10177476 - 10177425
Alignment:
Q  1 gccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaat 52  Q
    ||||||| ||||||||||| ||||||||||||| |||| ||| |||||||||    
T  10177476 gccaaatagagagacttcaattgagggtatacaccaaaatccggcaaagaat 10177425  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 33396786 - 33396820
Alignment:
Q  1 gccaaatggagagacttcacttgagggtatacaac 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  33396786 gccaaatggagagacttcacttgatggtatacaac 33396820  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 33708838 - 33708804
Alignment:
Q  1 gccaaatggagagacttcacttgagggtatacaac 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  33708838 gccaaatggagagacttcacttgatggtatacaac 33708804  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 37580641 - 37580607
Alignment:
Q  1 gccaaatggagagacttcacttgagggtatacaac 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  37580641 gccaaatggagagacttcacttgatggtatacaac 37580607  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 33093748 - 33093715
Alignment:
Q  1 gccaaatggagagacttcacttgagggtatacaa 34  Q
    |||||||||||||||||||||||| |||||||||    
T  33093748 gccaaatggagagacttcacttgacggtatacaa 33093715  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 514546 - 514486
Alignment:
Q  1 gccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaattagagttct 61  Q
    ||||||| |||||| || | ||||||||  ||||||||||||| ||||||||| |||||||    
T  514546 gccaaatagagagattttaattgagggttcacaacaaagtccaacaaagaattggagttct 514486  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 51764253 - 51764201
Alignment:
Q  9 gagagacttcacttgagggtatacaacaaagtccagcaaagaattagagttct 61  Q
    ||||||||| | ||||||||||||| ||||||||| |||||||| ||| ||||    
T  51764253 gagagactttaattgagggtatacaccaaagtccaccaaagaatcagaattct 51764201  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 547194 - 547254
Alignment:
Q  1 gccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaattagagttct 61  Q
    ||||||||||||||||||| |||||||  ||||||||| |||   ||||||||||| ||||    
T  547194 gccaaatggagagacttcaattgagggcttacaacaaaatccttgaaagaattagaattct 547254  T

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