View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14165_low_3 (Length: 559)
Name: NF14165_low_3
Description: NF14165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14165_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 392 - 531
Target Start/End: Complemental strand, 18496765 - 18496626
Alignment:
| Q |
392 |
aaatatcaatattaagttatactattatttcatgatttattactattatctcttgagatttgattaatcattcagttcatgccttcgatttgggtaaatg |
491 |
Q |
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| T |
18496765 |
aaatatcaatattaagttatactattatttcgtgatttattattattatctcttaggttttgatttatcattcagttcatgccttcgatttgggtaaatg |
18496666 |
T |
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| Q |
492 |
ttatgtatcttgttctattaagtctttcggttaaacaagt |
531 |
Q |
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| T |
18496665 |
ttatgtatcttgttctattaactctttcggttaaacaagt |
18496626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 18496873 - 18496808
Alignment:
| Q |
4 |
agtgagatgaagcttggtggagtatgataatgtctctagaaaacatgatattagtagttttgggtt |
69 |
Q |
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||||| |||| |||||||||| ||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
18496873 |
agtgatatgacgcttggtggattatgatattgtctctagaaaacatgatattagtagttttaggtt |
18496808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 392 - 531
Target Start/End: Complemental strand, 34200352 - 34200213
Alignment:
| Q |
392 |
aaatatcaatattaagttatactattatttcatgatttattactattatctcttgagatttgattaatcattcagttcatgccttcgatttgggtaaatg |
491 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| ||||||||||| | ||||||| |||||||||| |||||||||||||||||||||| |
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| T |
34200352 |
aaatatcaatattaagttatactattatttcgtgatttattattattatctcttaggttttgatttatcattcagtacatgccttcgatttgggtaaata |
34200253 |
T |
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| Q |
492 |
ttatgtatcttgttctattaagtctttcggttaaacaagt |
531 |
Q |
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||||||||||||||||||||| |||||||||||||||||| |
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| T |
34200252 |
ttatgtatcttgttctattaactctttcggttaaacaagt |
34200213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 34200460 - 34200395
Alignment:
| Q |
4 |
agtgagatgaagcttggtggagtatgataatgtctctagaaaacatgatattagtagttttgggtt |
69 |
Q |
| |
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||||| |||| |||||||||| ||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
34200460 |
agtgatatgacgcttggtggattatgatattgtctctagaaaacatgatattagtagttttaggtt |
34200395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 4 - 120
Target Start/End: Original strand, 23094690 - 23094806
Alignment:
| Q |
4 |
agtgagatgaagcttggtggagtatgataatgtctctagaaaacatgatattagtagttttgggttgcttgtttactatgnnnnnnnnattggatgactt |
103 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||| |
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| T |
23094690 |
agtgatatgaagcttggtggagtatgataatgtctctagaaaacatgatattagtagttttgggttgcttgatgactatgttttttttattggatgactt |
23094789 |
T |
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| Q |
104 |
aataaaaccatgtcaat |
120 |
Q |
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| || ||||||| |||| |
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| T |
23094790 |
actagaaccatggcaat |
23094806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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